Evidence map›Paper›PMID 29925947›Full record

ArticleNature2018

Nuclear ARP2/3 drives DNA break clustering for homology-directed repair.

Benjamin R Schrank, Tomas Aparicio, Yinyin Li, Wakam Chang, Brian T Chait, Gregg G Gundersen, Max E Gottesman, Jean Gautier

Abstract read
In one paragraph

Article in Nature, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 240 papers.

0numbers the graph read from it
0cells of the map it votes in
240citing papers in PubMed
16.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

240 citing papers in PubMed, 415 citations in OpenAlex.

  1. Article
  2. Kinetic Control of Condensate Function: How the Formation Dynamics of APBs Influence ALT Cancer Telomere Length Heterogeneity.BioEssays : news and reviews in molecular, cellular and developmental biology · 2026
    Review
  3. Article
  4. The Role of Arp2/3 in End-Resection During DNA Double-Strand Break Repair.BioEssays : news and reviews in molecular, cellular and developmental biology · 2026
    Review
  5. WAVE2 and REST/NRSF Regulate Clustered Gene Expression by Maintaining Heterochromatin Organization.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
    Article
  6. Alterations of actin in aging.Journal of cell science · 2026
    Review
  7. Article
  8. Article
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  12. Article
  13. Review
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180 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Benjamin R SchrankInstitute for Cancer Genetics, College of Physicians and Surgeons, Columbia University, New York, NY, USA.
Tomas AparicioInstitute for Cancer Genetics, College of Physicians and Surgeons, Columbia University, New York, NY, USA.
Yinyin LiLaboratory of Mass Spectrometry and Gaseous Ion Chemistry, The Rockefeller University, New York, NY, USA.
Wakam ChangDepartment of Pathology and Cell Biology, College of Physicians and Surgeons, Columbia University, New York, NY, USA.
Brian T ChaitLaboratory of Mass Spectrometry and Gaseous Ion Chemistry, The Rockefeller University, New York, NY, USA.
Gregg G GundersenDepartment of Pathology and Cell Biology, College of Physicians and Surgeons, Columbia University, New York, NY, USA.
Max E GottesmanDepartment of Biochemistry and Biophysics, College of Physicians and Surgeons, Columbia University, New York, NY, USA.
Jean GautierInstitute for Cancer Genetics, College of Physicians and Surgeons, Columbia University, New York, NY, USA. jg130@cumc.columbia.edu.
Columbia University · USCancer Genetics (United States) · USRockefeller University · US

Funding

Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Anil K Rustgi · 1985 to 2026
$115.3M
TR&D Project 4. The Imaging Stage: Multiscale Spatiotemporal Modeling of Macromolecular Systems in Cellular NeighborhoodsP41GM109824 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2014 to 2023
$18.8M
The Role of CTIP in Lymphocyte Development and LymphomagenesisP01CA174653 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SYMINGTON, LORRAINE S · 2014 to 2024
$17.6M
National Resource for Mass Spectrom of Biological MacromoleculesP41GM103314 · NIGMS · ROCKEFELLER UNIVERSITY · PI CHAIT, BRIAN T · 2012 to 2017
$9.9M
CONTROL OF TRANSCRIPTION TERMINATION IN E. COLIR01GM037219 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI GOTTESMAN, MAX ELLIOT · 1986 to 2017
$6.6M
DNA Repair and Genomic Instability in Cancer Development and TherapyR35CA197606 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GAUTIER, JEAN · 2015 to 2021
$5.7M
Role of Nucleo-cytoskeleton Interactions in Cell MigrationR01GM099481 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GUNDERSEN, GREGG G · 2011 to 2019
$2.9M
MULTIPHOTON CONFOCAL MICROSCOPES10RR025686 · NCRR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI PON, LIZA A · 2010 to 2010
$499k
Role of Nuclear Actin Polymerization in Double-Strand Break Mobility and RepairF30CA217049 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SCHRANK, BENJAMIN R · 2018 to 2020
$131k
NCI NIH HHS F30 CA217049NCI NIH HHS P01 CA174653NCI NIH HHS P30 CA013696NCI NIH HHS R35 CA197606NCRR NIH HHS S10 RR025686NIGMS NIH HHS P41 GM103314NIGMS NIH HHS P41 GM109824NIGMS NIH HHS R01 GM037219NIGMS NIH HHS R01 GM099481
6 · The paper itself

Abstract

DNA double-strand breaks repaired by non-homologous end joining display limited DNA end-processing and chromosomal mobility. By contrast, double-strand breaks undergoing homology-directed repair exhibit extensive processing and enhanced motion. The molecular basis of this movement is unknown. Here, using Xenopus laevis cell-free extracts and mammalian cells, we establish that nuclear actin, WASP, and the actin-nucleating ARP2/3 complex are recruited to damaged chromatin undergoing homology-directed repair. We demonstrate that nuclear actin polymerization is required for the migration of a subset of double-strand breaks into discrete sub-nuclear clusters. Actin-driven movements specifically affect double-strand breaks repaired by homology-directed repair in G2 cell cycle phase; inhibition of actin nucleation impairs DNA end-processing and homology-directed repair. By contrast, ARP2/3 is not enriched at double-strand breaks repaired by non-homologous end joining and does not regulate non-homologous end joining. Our findings establish that nuclear actin-based mobility shapes chromatin organization by generating repair domains that are essential for homology-directed repair in eukaryotic cells.

Indexed as

DNA Breaks, Double-StrandedRecombinational DNA RepairActin CytoskeletonActin-Related Protein 2-3 ComplexActinsAnimalsCell ExtractsCell NucleusChromatinDNA End-Joining RepairFemaleMovementProtein BindingProtein TransportWiskott-Aldrich Syndrome ProteinXenopus laevisActin-Related Protein 2-3 ComplexActinsCell ExtractsChromatinWiskott-Aldrich Syndrome Protein

Identifiers

PMID29925947
PMCPMC6145447
OpenAlexW2809439755

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.