Evidence map›Paper›PMID 29925909›Full record

ArticleScientific reports2018

Shift from stochastic to spatially-ordered expression of serine-glycine synthesis enzymes in 3D microtumors.

Manjulata Singh, Katsuhiko Warita, Tomoko Warita, James R Faeder, Robin E C Lee, Shilpa Sant, Zoltán N Oltvai

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. PHGDH: a novel therapeutic target in cancer.Experimental & molecular medicine · 2024
    Review
  3. Review
  4. Breast cancers as ecosystems: a metabolic perspective.Cellular and molecular life sciences : CMLS · 2023
    Review
  5. Article
  6. Review
  7. Review
  8. Review
  9. Review
  10. Article
  11. PHGDH as a mechanism for resistance in metabolically-driven cancers.Cancer drug resistance (Alhambra, Calif.) · 2020
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Manjulata SinghDepartment of Pharmaceutical Sciences, School of Pharmacy, University of Pittsburgh, Pittsburgh, PA, 15261, USA.
Katsuhiko WaritaDepartment of Pathology, School of Medicine, University of Pittsburgh, Pittsburgh, PA, 15213, USA.
Tomoko WaritaDepartment of Pathology, School of Medicine, University of Pittsburgh, Pittsburgh, PA, 15213, USA.
James R FaederDepartment of Computational & Systems Biology, School of Medicine, University of Pittsburgh, Pittsburgh, PA, 15260, USA.
Robin E C LeeDepartment of Computational & Systems Biology, School of Medicine, University of Pittsburgh, Pittsburgh, PA, 15260, USA. robinlee@pitt.edu.ORCID 0000-0001-7209-3929
Shilpa SantDepartment of Pharmaceutical Sciences, School of Pharmacy, University of Pittsburgh, Pittsburgh, PA, 15261, USA. SHS149@pitt.edu.ORCID 0000-0002-2017-9584
Zoltán N OltvaiDepartment of Pathology, School of Medicine, University of Pittsburgh, Pittsburgh, PA, 15213, USA. oltvai@pitt.edu.
University of Pittsburgh · US

Funding

TrainingP41GM103712 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FAEDER, JAMES · 2012 to 2021
$16.3M
Equipment Supplement for 5R35GM119462: Deciphering dynamic signals in control of cell fate decisionsR35GM119462 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LEE, ROBIN E. C. · 2016 to 2025
$4.2M
Engineered Microenvironments to model effect of size in tumor progressionR03EB018575 · NIBIB · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SANT, SHILPA · 2014 to 2015
$154k
NIBIB NIH HHS R03 EB018575NIGMS NIH HHS R35 GM119462
6 · The paper itself

Abstract

Cell-to-cell differences in protein expression in normal tissues and tumors are a common phenomenon, but the underlying principles that govern this heterogeneity are largely unknown. Here, we show that in monolayer cancer cell-line cultures, the expression of the five metabolic enzymes of serine-glycine synthesis (SGS), including its rate-limiting enzyme, phosphoglycerate dehydrogenase (PHGDH), displays stochastic cell-to-cell variation. By contrast, in cancer cell line-derived three-dimensional (3D) microtumors PHGDH expression is restricted to the outermost part of the microtumors' outer proliferative cell layer, while the four other SGS enzymes display near uniform expression throughout the microtumor. A mathematical model suggests that metabolic stress in the microtumor core activates factors that restrict PHGDH expression. Thus, intracellular enzyme expression in growing cell ecosystems can shift to spatially ordered patterns in 3D structured environments due to emergent cell-cell communication, with potential implications for the design of effective anti-metabolic cancer therapies.

Indexed as

Cell CommunicationCell Line, TumorCell ProliferationEcosystemGlycineHumansKi-67 AntigenModels, TheoreticalPhosphoglycerate DehydrogenaseSerineGlycineKi-67 AntigenPhosphoglycerate DehydrogenaseSerine

Identifiers

PMID29925909
PMCPMC6010463
OpenAlexW2807934204

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.