Evidence map›Paper›PMID 29925854›Full record

ArticleScientific reports2018

Avian influenza surveillance in domestic waterfowl and environment of live bird markets in Bangladesh, 2007-2012.

Salah Uddin Khan, Emily S Gurley, Nancy Gerloff, Md Z Rahman, Natosha Simpson, Mustafizur Rahman, Najmul Haider, Sukanta Chowdhury, Amanda Balish, Rashid Uz Zaman and 7 more

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  17. Interpretation of molecular detection of avian influenza A virus in respiratory specimens collected from live bird market workers in Dhaka, Bangladesh: infection or contamination?International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Salah Uddin Khanicddr,b (International Centre for Diarrhoeal Disease Research, Bangladesh), Dhaka, Bangladesh. sukhanbd@gmail.com.ORCID 0000-0001-5928-9257
Emily S Gurleyicddr,b (International Centre for Diarrhoeal Disease Research, Bangladesh), Dhaka, Bangladesh.
Nancy GerloffCenters for Disease Control and Prevention, (CDC), Atlanta, GA, USA.ORCID 0000-0001-5696-8318
Md Z Rahmanicddr,b (International Centre for Diarrhoeal Disease Research, Bangladesh), Dhaka, Bangladesh.ORCID 0000-0002-4103-4835
Natosha SimpsonCenters for Disease Control and Prevention, (CDC), Atlanta, GA, USA.
Mustafizur Rahmanicddr,b (International Centre for Diarrhoeal Disease Research, Bangladesh), Dhaka, Bangladesh.
Najmul Haidericddr,b (International Centre for Diarrhoeal Disease Research, Bangladesh), Dhaka, Bangladesh.
Sukanta Chowdhuryicddr,b (International Centre for Diarrhoeal Disease Research, Bangladesh), Dhaka, Bangladesh.
Amanda BalishCenters for Disease Control and Prevention, (CDC), Atlanta, GA, USA.
Rashid Uz Zamanicddr,b (International Centre for Diarrhoeal Disease Research, Bangladesh), Dhaka, Bangladesh.
Sharifa Nasreenicddr,b (International Centre for Diarrhoeal Disease Research, Bangladesh), Dhaka, Bangladesh.
Bidhan Chandra DasDepartment of Livestock Services, Ministry of Fisheries and Livestock, Dhaka, Bangladesh.
Eduardo Azziz-BaumgartnerCenters for Disease Control and Prevention, (CDC), Atlanta, GA, USA.
Katharine Sturm-Ramirezicddr,b (International Centre for Diarrhoeal Disease Research, Bangladesh), Dhaka, Bangladesh.
C Todd DavisCenters for Disease Control and Prevention, (CDC), Atlanta, GA, USA.
Ruben O DonisCenters for Disease Control and Prevention, (CDC), Atlanta, GA, USA.
Stephen P Lubyicddr,b (International Centre for Diarrhoeal Disease Research, Bangladesh), Dhaka, Bangladesh. sluby@stanford.edu.

Funding

ADDRESSING EMERGING INFECTIOUS DISEASES IN BANGLADESHU01CI000628 · CI · INTERNATIONAL CTR/DIARRHOEAL DIS RES · PI LATRIELLE, SARA · 2009 to 2014
$21.1M
NCPDCID CDC HHS U01 CI000628
6 · The paper itself

Abstract

Avian influenza viruses, including highly pathogenic strains, pose severe economic, animal and public health concerns. We implemented live bird market surveillance in Bangladesh to identify the subtypes of avian influenza A viruses in domestic waterfowl and market environments. We collected waterfowl samples monthly from 4 rural sites from 2007 to 2012 and environmental samples from 4 rural and 16 urban sites from 2009 to 2012. Samples were tested through real-time RT-PCR, virus culture, and sequencing to detect and characterize avian influenza A viruses. Among 4,308 waterfowl tested, 191 (4.4%) were positive for avian influenza A virus, including 74 (1.9%) avian influenza A/H5 subtype. The majority (99%, n = 73) of the influenza A/H5-positive samples were from healthy appearing waterfowl. Multiple subtypes, including H1N1, H1N3, H3N2, H3N6, H3N8, H4N1, H4N2, H4N6, H5N1 (clades 2.2.2, 2.3.2.1a, 2.3.4.2), H5N2, H6N1, H7N9, H9N2, H11N2 and H11N3, H11N6 were detected in waterfowl and environmental samples. Environmental samples tested positive for influenza A viruses throughout the year. Avian influenza viruses, including H5N1 and H9N2 subtypes were also identified in backyard and small-scale raised poultry. Live bird markets could be high-risk sites for harboring the viruses and have the potential to infect naive birds and humans exposed to them.

Indexed as

AnimalsBangladeshBirdsInfluenza A virusInfluenza A Virus, H1N1 SubtypeInfluenza A Virus, H3N2 SubtypeInfluenza A Virus, H5N1 SubtypeInfluenza A Virus, H9N2 SubtypeInfluenza in BirdsPoultry DiseasesReal-Time Polymerase Chain ReactionReverse Transcriptase Polymerase Chain Reaction

Identifiers

PMID29925854
PMCPMC6010472

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.