Evidence map›Paper›PMID 29925637›Full record

ArticleScience translational medicine2018

Interrogation of nonconserved human adipose lincRNAs identifies a regulatory role of

Xuan Zhang, Chenyi Xue, Jennie Lin, Jane F Ferguson, Amber Weiner, Wen Liu, Yumiao Han, Christine Hinkle, Wenjun Li, Hongfeng Jiang and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Science translational medicine, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Advances in the Regulation of Lipid Metabolism by Non-Coding RNAs.Animals : an open access journal from MDPI · 2025
    Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Human Macrophage Long Intergenic Noncoding RNA,Arteriosclerosis, thrombosis, and vascular biology · 2023
    Article
  13. Article
  14. Long Noncoding RNAs in the Pathogenesis of Insulin Resistance.International journal of molecular sciences · 2022
    Review
  15. LncRNA-Mediated Adipogenesis in Different Adipocytes.International journal of molecular sciences · 2022
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. The impact of obesity on adipocyte-derived extracellular vesicles.Cellular and molecular life sciences : CMLS · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 2 countries.

Xuan ZhangDivision of Cardiology, Department of Medicine, Columbia University Medical Center, New York, NY 10032, USA.ORCID 0000-0002-9793-8550
Chenyi XueDivision of Cardiology, Department of Medicine, Columbia University Medical Center, New York, NY 10032, USA.ORCID 0000-0002-8829-7659
Jennie LinFeinberg Cardiovascular and Renal Research Institute, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA.
Jane F FergusonDivision of Cardiovascular Medicine, School of Medicine, Vanderbilt University, Nashville, TN 37232, USA.ORCID 0000-0001-6896-1025
Amber WeinerEpigenetics Program, Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Wen LiuDivision of Cardiology, Department of Medicine, Columbia University Medical Center, New York, NY 10032, USA.
Yumiao HanEpigenetics Program, Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Christine HinkleCardiovascular Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID 0000-0002-4875-3875
Wenjun LiCardiovascular Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Hongfeng JiangKey Laboratory of Remodeling-Related Cardiovascular Diseases, Beijing Collaborative Innovation Center for Cardiovascular Disorders, Beijing Anzhen Hospital, Capital Medical University, Beijing 100029, China.
Sager GosaiDepartment of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA.
Melanie HachetDivision of Cardiology, Department of Medicine, Columbia University Medical Center, New York, NY 10032, USA.ORCID 0000-0003-0040-5959
Benjamin A GarciaEpigenetics Program, Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Brian D GregoryDepartment of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID 0000-0001-7532-0138
Raymond E SoccioThe Institute for Diabetes, Obesity and Metabolism, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
John B HogeneschDivisions of Human Genetics and Immunobiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH 45267, USA.ORCID 0000-0002-9138-8973
Patrick SealeDepartment of Cell and Developmental Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Mingyao LiDepartment of Biostatistics and Epidemiology, University of Pennsylvania, Philadelphia, PA 19104, USA.
Muredach P ReillyDivision of Cardiology, Department of Medicine, Columbia University Medical Center, New York, NY 10032, USA. mpr2144@cumc.columbia.edu.
University of Pennsylvania · USColumbia University Irving Medical Center · USBeijing Anzhen Hospital · CNCincinnati Children's Hospital Medical Center · USNorthwestern University · USVanderbilt University · US

Funding

Elucidation of Tissue-Specific Transcriptomic Profiles in Cardiometabolic DiseaseR01HL113147 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI LI, MINGYAO, REILLY, MUREDACH P · 2012 to 2022
$6.8M
Viral modulation of epitranscriptomic mechanismsR01AI118891 · NIAID · WASHINGTON UNIVERSITY · PI GARCIA, BENJAMIN A, WEITZMAN, MATTHEW D. · 2015 to 2025
$5.4M
Function of the IncRNA transcriptome in lung development and regenerationR01HL122993 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI MORRISEY, EDWARD E · 2015 to 2018
$2.5M
Translational Studies of ADAMTS7 a Novel GWAS Locus for Coronary AtherosclerosisR01HL111694 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI REILLY, MUREDACH P · 2012 to 2015
$2.4M
Mentored Patient Oriented Research in Cardiometabolic DiseaseK24HL107643 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI REILLY, MUREDACH P · 2011 to 2020
$1.4M
Understanding the Role of Combinatorial Histone PTM PatternsR01GM110174 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI GARCIA, BENJAMIN A · 2014 to 2017
$1.3M
Statistical Methods for Transcriptome Profiling Using RNA SequencingR01GM108600 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI LI, MINGYAO · 2014 to 2017
$1.2M
NHLBI NIH HHS K24 HL107643NHLBI NIH HHS R01 HL111694NHLBI NIH HHS R01 HL113147NHLBI NIH HHS R01 HL122993NIAID NIH HHS R01 AI118891NIGMS NIH HHS R01 GM108600NIGMS NIH HHS R01 GM110174
6 · The paper itself

Abstract

Long intergenic noncoding RNAs (lincRNAs) have emerged as important modulators of cellular functions. Most lincRNAs are not conserved among mammals, raising the fundamental question of whether nonconserved adipose-expressed lincRNAs are functional. To address this, we performed deep RNA sequencing of gluteal subcutaneous adipose tissue from 25 healthy humans. We identified 1001 putative lincRNAs expressed in all samples through de novo reconstruction of noncoding transcriptomes and integration with existing lincRNA annotations. One hundred twenty lincRNAs had adipose-enriched expression, and 54 of these exhibited peroxisome proliferator-activated receptor γ (PPARγ) or CCAAT/enhancer binding protein α (C/EBPα) binding at their loci. Most of these adipose-enriched lincRNAs (~85%) were not conserved in mice, yet on average, they showed degrees of expression and binding of PPARγ and C/EBPα similar to those displayed by conserved lincRNAs. Most adipose lincRNAs differentially expressed (

Indexed as

AdipocytesAdipose TissueCell DifferentiationCell NucleusGene Expression RegulationHeterogeneous-Nuclear Ribonucleoprotein UHumansLipidsLipogenesisPPAR gammaRNA-Binding ProteinsRNA, Long NoncodingRNA, MessengerTranscription, GeneticHeterogeneous-Nuclear Ribonucleoprotein UHNRNPU protein, humanIGF2BP2 protein, humanLipidsPPAR gammaRNA-Binding ProteinsRNA, Long NoncodingRNA, Messenger

Identifiers

PMID29925637
PMCPMC6620026
OpenAlexW2809444750

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.