Evidence map›Paper›PMID 29925590›Full record

ArticleThe Journal of biological chemistry2018

The cyanobacterial protoporphyrinogen oxidase HemJ is a new

Petra Skotnicová, Roman Sobotka, Mark Shepherd, Jan Hájek, Pavel Hrouzek, Martin Tichý

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
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  6. Epigenetic control of tetrapyrrole biosynthesis by m4C DNA methylation in a cyanobacterium.DNA research : an international journal for rapid publication of reports on genes and genomes · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 4 countries.

Petra SkotnicováFrom the Czech Academy of Sciences, Institute of Microbiology, Centre Algatech, 379 81 Třeboň, Czech Republic.ORCID 0000-0002-6077-0256
Roman SobotkaFrom the Czech Academy of Sciences, Institute of Microbiology, Centre Algatech, 379 81 Třeboň, Czech Republic.
Mark Shepherdthe School of Biosciences, RAPID Group, University of Kent, Canterbury CT2 7NZ,United Kingdom.
Jan HájekFrom the Czech Academy of Sciences, Institute of Microbiology, Centre Algatech, 379 81 Třeboň, Czech Republic.
Pavel HrouzekFrom the Czech Academy of Sciences, Institute of Microbiology, Centre Algatech, 379 81 Třeboň, Czech Republic.
Martin TichýFrom the Czech Academy of Sciences, Institute of Microbiology, Centre Algatech, 379 81 Třeboň, Czech Republic, tichym@alga.cz.
Sewanee: The University of the South · USUniversity of Kent · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protoporphyrinogen IX oxidase (PPO), the last enzyme that is common to both chlorophyll and heme biosynthesis pathways, catalyzes the oxidation of protoporphyrinogen IX to protoporphyrin IX. PPO has several isoforms, including the oxygen-dependent HemY and an oxygen-independent enzyme, HemG. However, most cyanobacteria encode HemJ, the least characterized PPO form. We have characterized HemJ from the cyanobacterium

Indexed as

Coproporphyrinogen OxidaseHemeModels, MolecularOxidation-ReductionProtoporphyrinogen OxidaseSynechocystisTetrapyrrolesCoproporphyrinogen OxidaseHemeProtoporphyrinogen OxidaseTetrapyrrolescoproporphyrinogen III oxidasecyanobacteriaenzyme purificationhemeHemJmembrane proteinphotosynthesisprotoporphyrinogen IX oxidaseSynechocystis sp. PCC 6803

Identifiers

PMID29925590
PMCPMC6093240
OpenAlexW2808772684

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.