Evidence map›Paper›PMID 29924316›Full record

ArticleCarcinogenesis2018

Genome-wide association study of familial lung cancer.

Jinyoung Byun, Ann G Schwartz, Christine Lusk, Angela S Wenzlaff, Mariza de Andrade, Diptasri Mandal, Colette Gaba, Ping Yang, Ming You, Elena Y Kupert and 21 more

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in Carcinogenesis, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02295085 (Fernald Community Cohort - 18 Year Observational Study with Bio Banked Blood and Urine Samples), which is not on this map. Cited by 45 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed, 2 pooled it
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02295085 unknown statusnot on this map

Fernald Community Cohort - 18 Year Observational Study with Bio Banked Blood and Urine Samples

TypeobservationalSponsorUniversity of CincinnatiRan1990 to 2025Enrolled9,782ConditionsCancer, Renal Failure, Diabetes, Cardiovascular Disease
3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 2 syntheses or guidelines pooled it, 69 citations in OpenAlex.

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  17. A systematic review and meta-analysis to evaluate blood levels of interleukin-6 in lung cancer patients.Kardiochirurgia i torakochirurgia polska = Polish journal of cardio-thoracic surgery · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors at 15 institutions in 3 countries.

Jinyoung ByunDepartment of Biomedical Data Science, Dartmouth Geisel School of Medicine, Lebanon, NH, USA.
Ann G SchwartzKarmanos Cancer Institute, Wayne State University, Detroit, MI, USA.
Christine LuskKarmanos Cancer Institute, Wayne State University, Detroit, MI, USA.
Angela S WenzlaffKarmanos Cancer Institute, Wayne State University, Detroit, MI, USA.
Mariza de AndradeDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN, USA.
Diptasri MandalLouisiana State University Health Sciences Center, New Orleans, LA, USA.
Colette GabaUniversity of Toledo Dana Cancer Center, Toledo, OH, USA.
Ping YangDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN, USA.
Ming YouMedical College of Wisconsin, Milwaukee, WI, USA.
Elena Y KupertMedical College of Wisconsin, Milwaukee, WI, USA.
Marshall W AndersonMedical College of Wisconsin, Milwaukee, WI, USA.
Younghun HanDepartment of Biomedical Data Science, Dartmouth Geisel School of Medicine, Lebanon, NH, USA.
Yafang LiDepartment of Biomedical Data Science, Dartmouth Geisel School of Medicine, Lebanon, NH, USA.
David QianDepartment of Biomedical Data Science, Dartmouth Geisel School of Medicine, Lebanon, NH, USA.
Adrienne StilpGenetic Analysis Center, University of Washington, Seattle, WA, USA.
Cathy LaurieGenetic Analysis Center, University of Washington, Seattle, WA, USA.
Sarah NelsonGenetic Analysis Center, University of Washington, Seattle, WA, USA.
Wenying ZhengGenetic Analysis Center, University of Washington, Seattle, WA, USA.
Rayjean J HungLunenfeld-Tanenbaum Research Institute, Sinai Health System, Toronto, Ontario, Canada.
Valerie GaborieauGenetic Epidemiology Group, International Agency for Research on Cancer (IARC), Lyon, France.
James MckayGenetic Epidemiology Group, International Agency for Research on Cancer (IARC), Lyon, France.
Paul BrennanGenetic Epidemiology Group, International Agency for Research on Cancer (IARC), Lyon, France.
Neil E CaporasoDivision of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
Maria Teresa LandiDivision of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
Xifeng WuDepartment of Epidemiology, University of Texas MD Anderson Cancer Center, Houston, TX, USA.
John R McLaughlinPublic Health Ontario, Toronto, Canada.
Yonathan BrhaneGenetic Analysis Center, University of Washington, Seattle, WA, USA.
Yohan BosséInstitut Universitaire de Cardiologie et de Pneumologie de Québec, Department of Molecular Medicine, Laval University, Québec, Canada.
Susan M PinneyUniversity of Cincinnati College of Medicine, Cincinnati, OH, USA.
Joan E Bailey-WilsonNational Human Genome Research Institute, National Institutes of Health, Baltimore, MD, USA.
Christopher I AmosDepartment of Biomedical Data Science, Dartmouth Geisel School of Medicine, Lebanon, NH, USA.
Dartmouth College · USUniversity of Washington · USCentre International de Recherche sur le Cancer · FRMedical College of Wisconsin · USWayne State University · USMayo Clinic in Florida · USNational Institutes of Health · USInstitut Universitaire de Cardiologie et de Pneumologie de Québec · CALouisiana State University Health Sciences Center New Orleans · USLunenfeld-Tanenbaum Research Institute · CANational Cancer Institute · USPublic Health Ontario · CAThe University of Texas MD Anderson Cancer Center · USUniversity of Cincinnati Medical Center · USUniversity of Toledo · US

Funding

Tumor Biology and Microenvironment (Program 1)P30CA022453 · NCI · WAYNE STATE UNIVERSITY · PI Julie Lynn Boerner · 1985 to 2026
$68.4M
REPRODUCTIVE AND DEVELOPMENTAL TOXICOLOGY RESEARCHP30ES006096 · NIEHS · UNIVERSITY OF CINCINNATI · PI PINNEY, SUSAN MENGEL · 1992 to 2022
$35.4M
Translating Molecular and Clinical Data to Population Lung Cancer Risk AssessmentU19CA203654 · NCI · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI Christopher I. Amos · 2017 to 2026
$23.7M
Genetic Epidemiology of CancerZIAHG200331 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BAILEY-WILSON, JOAN ELLEN · 2009 to 2022
$11.7M
GENETIC EPIDEMIOLOGY OF LUNG CANCERU01CA076293 · NCI · UNIVERSITY OF CINCINNATI · PI ANDERSON, MARSHALL W · 1999 to 2009
$11.5M
Transdisciplinary Research in Cancer of the Lung (TRICL)U19CA148127 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI AMOS, CHRISTOPHER I., LE MARCHAND, LOIC · 2010 to 2014
$10.9M
GENETIC EPIDEMIOLOGY OF LUNG CANCERR01CA060691 · NCI · WAYNE STATE UNIVERSITY · PI SCHWARTZ, ANN G. · 1995 to 2009
$6.2M
ALPHA 1 AD CARRIERS AND LUNG CANCER RISKR01CA080127 · NCI · MAYO CLINIC ROCHESTER · PI YANG, PING · 2000 to 2009
$4.4M
Adenocarinoma of the Lung in WomenR01CA087895 · NCI · WAYNE STATE UNIVERSITY · PI SCHWARTZ, ANN G · 2001 to 2005
$3.0M
DEVELOPMENT OF LUNG CANCER EPIDEMIOLOGY RESEARCHR03CA077118 · NCI · MAYO CLINIC COLL OF MEDICINE, ROCHESTER · PI YANG, PING · 1997 to 1998
–
NCI NIH HHS P30 CA022453NCI NIH HHS R01 CA060691NCI NIH HHS R01 CA080127NCI NIH HHS R01 CA087895NCI NIH HHS R03 CA077118NCI NIH HHS U01 CA076293NCI NIH HHS U19 CA148127NCI NIH HHS U19 CA203654NHGRI NIH HHS HHSN268200782096CNHLBI NIH HHS HHSN268201000007CNHLBI NIH HHS HHSN268201100011CNHLBI NIH HHS HHSN268201100011INIEHS NIH HHS P30 ES006096World Health Organization 001
6 · The paper itself

Abstract

To identify genetic variation associated with lung cancer risk, we performed a genome-wide association analysis of 685 lung cancer cases that had a family history of two or more first or second degree relatives compared with 744 controls without lung cancer that were genotyped on an Illumina Human OmniExpressExome-8v1 array. To ensure robust results, we further evaluated these findings using data from six additional studies that were assembled through the Transdisciplinary Research on Cancer of the Lung Consortium comprising 1993 familial cases and 33 690 controls. We performed a meta-analysis after imputation of all variants using the 1000 Genomes Project Phase 1 (version 3 release date September 2013). Analyses were conducted for 9 327 222 SNPs integrating data from the two sources. A novel variant on chromosome 4p15.31 near the LCORL gene and an imputed rare variant intergenic between CDKN2A and IFNA8 on chromosome 9p21.3 were identified at a genome-wide level of significance for squamous cell carcinomas. Additionally, associations of CHRNA3 and CHRNA5 on chromosome 15q25.1 in sporadic lung cancer were confirmed at a genome-wide level of significance in familial lung cancer. Previously identified variants in or near CHRNA2, BRCA2, CYP2A6 for overall lung cancer, TERT, SECISPB2L and RTEL1 for adenocarcinoma and RAD52 and MHC for squamous carcinoma were significantly associated with lung cancer.

Indexed as

Genetic Predisposition to DiseaseGenome-Wide Association StudyAdenocarcinomaCarcinoma, Squamous CellCase-Control StudiesChromosomes, Human, Pair 15Chromosomes, Human, Pair 4Chromosomes, Human, Pair 9HumansLungLung NeoplasmsMedical History TakingPolymorphism, Single Nucleotide

Identifiers

PMID29924316
PMCPMC6148967
OpenAlexW2809588124

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.