Evidence map›Paper›PMID 29921915›Full record

ArticleNature communications2018

DNA methylation as a mediator of HLA-DRB1*15:01 and a protective variant in multiple sclerosis.

Lara Kular, Yun Liu, Sabrina Ruhrmann, Galina Zheleznyakova, Francesco Marabita, David Gomez-Cabrero, Tojo James, Ewoud Ewing, Magdalena Lindén, Bartosz Górnikiewicz and 38 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 119 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
119citing papers in PubMed, 2 pooled it
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

119 citing papers in PubMed, 2 syntheses or guidelines pooled it, 209 citations in OpenAlex.

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59 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

48 authors at 19 institutions in 9 countries.

Lara KularDepartment of Clinical Neuroscience, Center for Molecular Medicine, Karolinska Institutet, 171 77, Stockholm, Sweden.
Yun LiuCenter for Epigenetics, and Departments of Medicine, Biomedical Engineering and Mental Health, Johns Hopkins University, Baltimore, MD, 21205, USA.
Sabrina RuhrmannDepartment of Clinical Neuroscience, Center for Molecular Medicine, Karolinska Institutet, 171 77, Stockholm, Sweden.
Galina ZheleznyakovaDepartment of Clinical Neuroscience, Center for Molecular Medicine, Karolinska Institutet, 171 77, Stockholm, Sweden.
Francesco MarabitaDepartment of Clinical Neuroscience, Center for Molecular Medicine, Karolinska Institutet, 171 77, Stockholm, Sweden.ORCID http://orcid.org/0000-0001-6180-0106
David Gomez-CabreroUnit of Computational Medicine, Department of Medicine, Solna, Center for Molecular Medicine, Karolinska Institutet, 171 77, Stockholm, Sweden.
Tojo JamesDepartment of Clinical Neuroscience, Center for Molecular Medicine, Karolinska Institutet, 171 77, Stockholm, Sweden.
Ewoud EwingDepartment of Clinical Neuroscience, Center for Molecular Medicine, Karolinska Institutet, 171 77, Stockholm, Sweden.ORCID http://orcid.org/0000-0001-8644-366X
Magdalena LindénDepartment of Clinical Neuroscience, Center for Molecular Medicine, Karolinska Institutet, 171 77, Stockholm, Sweden.
Bartosz GórnikiewiczDepartment of Clinical Neuroscience, Center for Molecular Medicine, Karolinska Institutet, 171 77, Stockholm, Sweden.
Shahin AeinehbandDepartment of Clinical Neuroscience, Center for Molecular Medicine, Karolinska Institutet, 171 77, Stockholm, Sweden.
Pernilla StridhDepartment of Clinical Neuroscience, Center for Molecular Medicine, Karolinska Institutet, 171 77, Stockholm, Sweden.
Jenny LinkDepartment of Clinical Neuroscience, Center for Molecular Medicine, Karolinska Institutet, 171 77, Stockholm, Sweden.ORCID http://orcid.org/0000-0002-6134-9404
Till F M AndlauerMax Planck Institute of Psychiatry, 80804, Munich, Germany.ORCID http://orcid.org/0000-0002-2917-5889
Christiane GasperiDepartment of Neurology, Klinikum rechts der Isar, School of Medicine, Technische Universität München, 81675, Munich, Germany.
Heinz WiendlGerman Competence Network Multiple Sclerosis (KKNMS), Klinikum Rechts der Isar, Technische Universität München, 81675, Munich, Germany.
Frauke ZippGerman Competence Network Multiple Sclerosis (KKNMS), Klinikum Rechts der Isar, Technische Universität München, 81675, Munich, Germany.ORCID http://orcid.org/0000-0002-1231-1928
Ralf GoldGerman Competence Network Multiple Sclerosis (KKNMS), Klinikum Rechts der Isar, Technische Universität München, 81675, Munich, Germany.
Björn TackenbergGerman Competence Network Multiple Sclerosis (KKNMS), Klinikum Rechts der Isar, Technische Universität München, 81675, Munich, Germany.
Frank WeberMax Planck Institute of Psychiatry, 80804, Munich, Germany.
Bernhard HemmerDepartment of Neurology, Klinikum rechts der Isar, School of Medicine, Technische Universität München, 81675, Munich, Germany.
Konstantin StrauchInstitute of Genetic Epidemiology, Helmholtz Zentrum München, Neuherberg, Germany and Institute of Medical Informatics, Biometry, and Epidemiology, Chair of Genetic Epidemiology, Ludwig-Maximilians-Universität, 80539, Munich, Germany.
Stefanie Heilmann-HeimbachInstitute of Human Genetics, University Hospital Bonn and Division of Genomics, Life & Brain Research Centre, University of Bonn School of Medicine, 53113, Bonn, Germany.
Rajesh RawalInstitute of Epidemiology and Social Medicine, University of Münster, 48149, Münster, Germany.
Ulf SchminkeDepartment of Neurology, University Medicine Greifswald, 17489, Greifswald, Germany.
Carsten O SchmidtInstitute for Community Medicine, University Medicine Greifswald, 17489, Greifswald, Germany.
Tim KacprowskiInterfaculty Institute for Genetics and Functional Genomics, Ernst Moritz Arndt University and University Medicine Greifswald, 17489, Greifswald, Germany.ORCID http://orcid.org/0000-0002-5393-2413
Andre FrankeInstitute of Clinical Molecular Biology, Kiel University, 24105, Kiel, Germany.ORCID http://orcid.org/0000-0003-1530-5811
Matthias LaudesDepartment I of Internal Medicine, Kiel University, 24105, Kiel, Germany.
Alexander T DiltheyWellcome Trust Centre for Human Genetics, University of Oxford, Oxford, OX3 7BN, UK.
Elisabeth G CeliusDepartment of Neurology, Oslo University Hospital, 0372, Oslo, Norway.
Helle B SøndergaardDanish Multiple Sclerosis Center, Department of Neurology, Rigshospitalet, University of Copenhagen, 2100, Copenhagen, Denmark.
Jesper TegnérUnit of Computational Medicine, Department of Medicine, Solna, Center for Molecular Medicine, Karolinska Institutet, 171 77, Stockholm, Sweden.
Hanne F HarboDepartment of Neurology, Oslo University Hospital, 0372, Oslo, Norway.
Annette B OturaiDanish Multiple Sclerosis Center, Department of Neurology, Rigshospitalet, University of Copenhagen, 2100, Copenhagen, Denmark.
Sigurgeir OlafssondeCODE genetics/Amgen Inc, 101, Reykjavik, Iceland.
Hannes P EggertssondeCODE genetics/Amgen Inc, 101, Reykjavik, Iceland.ORCID http://orcid.org/0000-0002-1674-9978
Bjarni V HalldorssondeCODE genetics/Amgen Inc, 101, Reykjavik, Iceland.ORCID http://orcid.org/0000-0003-0756-0767
Haukur HjaltasonDepartment of Neurology, Landspitali, The National University of Iceland, 101, Reykjavik, Iceland.
Elias OlafssonDepartment of Neurology, Landspitali, The National University of Iceland, 101, Reykjavik, Iceland.
Ingileif JonsdottirdeCODE genetics/Amgen Inc, 101, Reykjavik, Iceland.
Kari StefanssondeCODE genetics/Amgen Inc, 101, Reykjavik, Iceland.
Tomas OlssonDepartment of Clinical Neuroscience, Center for Molecular Medicine, Karolinska Institutet, 171 77, Stockholm, Sweden.
Fredrik PiehlDepartment of Clinical Neuroscience, Center for Molecular Medicine, Karolinska Institutet, 171 77, Stockholm, Sweden.
Tomas J EkströmDepartment of Clinical Neuroscience, Center for Molecular Medicine, Karolinska Institutet, 171 77, Stockholm, Sweden.
Ingrid KockumDepartment of Clinical Neuroscience, Center for Molecular Medicine, Karolinska Institutet, 171 77, Stockholm, Sweden.
Andrew P FeinbergCenter for Epigenetics, and Departments of Medicine, Biomedical Engineering and Mental Health, Johns Hopkins University, Baltimore, MD, 21205, USA. afeinberg@jhu.edu.ORCID http://orcid.org/0000-0002-8364-1991
Maja JagodicDepartment of Clinical Neuroscience, Center for Molecular Medicine, Karolinska Institutet, 171 77, Stockholm, Sweden. Maja.Jagodic@ki.se.
Karolinska Institutet · SEdeCODE Genetics (Iceland) · ISTUM Klinikum · DEChristian-Albrechts-Universität zu Kiel · DEOslo University Hospital · NOUniversitätsmedizin Greifswald · DEUniversity of Copenhagen · DKUniversity of Iceland · ISUniversity of Münster · DECentre for Human Genetics · GBHelmholtz Zentrum München · DEJohannes Gutenberg University Mainz · DEJohns Hopkins University · USMax Planck Institute of Psychiatry · DEPhilipps University of Marburg · DEReykjavík University · ISShanghai Medical College of Fudan University · CNSt. Josef-Hospital · DEUniversity of Bonn · DE

Funding

A General Stochastic Epigenetic Model for Evolution, Development, and DiseaseDP1ES022579 · NIEHS · JOHNS HOPKINS UNIVERSITY · PI FEINBERG, ANDREW P. · 2012 to 2015
$3.2M
NIEHS NIH HHS DP1 ES022579
6 · The paper itself

Abstract

The human leukocyte antigen (HLA) haplotype DRB1*15:01 is the major risk factor for multiple sclerosis (MS). Here, we find that DRB1*15:01 is hypomethylated and predominantly expressed in monocytes among carriers of DRB1*15:01. A differentially methylated region (DMR) encompassing HLA-DRB1 exon 2 is particularly affected and displays methylation-sensitive regulatory properties in vitro. Causal inference and Mendelian randomization provide evidence that HLA variants mediate risk for MS via changes in the HLA-DRB1 DMR that modify HLA-DRB1 expression. Meta-analysis of 14,259 cases and 171,347 controls confirms that these variants confer risk from DRB1*15:01 and also identifies a protective variant (rs9267649, p < 3.32 × 10

Indexed as

DNA MethylationPolymorphism, Single NucleotideAdultAgedCells, CulturedCohort StudiesFemaleGene Expression RegulationGenetic Predisposition to DiseaseHLA-DRB1 ChainsHumansMaleMeta-Analysis as TopicMiddle AgedMultiple SclerosisRisk FactorsHLA-DRB1*15:01 antigenHLA-DRB1 Chains

Identifiers

PMID29921915
PMCPMC6008330
OpenAlexW2808054557

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.