ArticleScientific data2018
Warping an atlas derived from serial histology to 5 high-resolution MRIs.
Article in Scientific data, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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Who cites it
23 citing papers in PubMed.
- Morphological and anatomical variations in subcortical anatomy between humans and chimpanzees associated with heritability patterns related to human behavioral traits.Communications biology · 2026Article
- Spinal cord structural and functional architecture and its shared organization with the brain across the adult lifespan.Nature communications · 2026Article
- A generalizable normative deep autoencoder for brain morphological anomaly detection: application to the multi-site StratiBip dataset on bipolar disorder in an external validation framework.Artificial intelligence in medicine · 2025Article
- Implications of perivascular spaces in amyotrophic lateral sclerosis: clinical significance and structural correlation.Brain communications · 2025Article
- A generalizable normative deep autoencoder for brain morphological anomaly detection: application to the multi-site StratiBip dataset on bipolar disorder in an external validation framework.bioRxiv : the preprint server for biology · 2024Article
- Aberrant connectivity in the right amygdala and right middle temporal gyrus before and after a suicide attempt: Examining markers of suicide risk.Journal of affective disorders · 2023Article
- Brain imaging signatures in amyotrophic lateral sclerosis: Correlation with peripheral motor degeneration.Annals of clinical and translational neurology · 2023Article
- Cortical thinning in relation to impaired insight into illness in patients with treatment resistant schizophrenia.Schizophrenia (Heidelberg, Germany) · 2023Article
- Tensor image registration library: Deformable registration of stand-alone histology images to whole-brain post-mortem MRI data.NeuroImage · 2023Article
- High-resolution atlasing and segmentation of the subcortex: Review and perspective on challenges and opportunities created by machine learning.NeuroImage · 2022Review
- In Vivo 7-Tesla MRI Investigation of Brain Iron and Its Metabolic Correlates in Chronic Schizophrenia.Schizophrenia (Heidelberg, Germany) · 2022Article
- An executive function subtype of PTSD with unique neural markers and clinical trajectories.Translational psychiatry · 2022Article
- Striatal glutamate, subcortical structure and clinical response to first-line treatment in first-episode psychosis patients.Progress in neuro-psychopharmacology & biological psychiatry · 2022Article
- Differential Relationships Between Brain Structure and Dual Task Walking in Young and Older Adults.Frontiers in aging neuroscience · 2022Article
- Past, Present, and Future of Deep Brain Stimulation: Hardware, Software, Imaging, Physiology and Novel Approaches.Frontiers in neurology · 2022Review
- Involvement of the habenula in the pathophysiology of autism spectrum disorder.Scientific reports · 2021Article
- Characterizing the Subcortical Structures in Youth with Congenital Heart Disease.AJNR. American journal of neuroradiology · 2020Article
- Mapping the neuroanatomical impact of very preterm birth across childhood.Human brain mapping · 2020Article
- Interactive effects of age and recent substance use on striatal shape morphology at substance use disorder treatment entry.Drug and alcohol dependence · 2020Article
- Exploring the Neural Structures Underlying the Procedural Memory Network as Predictors of Language Ability in Children and Adolescents With Autism Spectrum Disorder and Attention Deficit Hyperactivity Disorder.Frontiers in human neuroscience · 2020Article
Corrections and comments
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Previous work from our group demonstrated the use of multiple input atlases to a modified multi-atlas framework (MAGeT-Brain) to improve subject-based segmentation accuracy. Currently, segmentation of the striatum, globus pallidus and thalamus are generated from a single high-resolution and -contrast MRI atlas derived from annotated serial histological sections. Here, we warp this atlas to five high-resolution MRI templates to create five de novo atlases. The overall goal of this work is to use these newly warped atlases as input to MAGeT-Brain in an effort to consolidate and improve the workflow presented in previous manuscripts from our group, allowing for simultaneous multi-structure segmentation. The work presented details the methodology used for the creation of the atlases using a technique previously proposed, where atlas labels are modified to mimic the intensity and contrast profile of MRI to facilitate atlas-to-template nonlinear transformation estimation. Dice's Kappa metric was used to demonstrate high quality registration and segmentation accuracy of the atlases. The final atlases are available at https://github.com/CobraLab/atlases/tree/master/5-atlas-subcortical.
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