Evidence map›Paper›PMID 29916185›Full record

ArticleWorld journal of microbiology & biotechnology2018

Comparative transcriptome analysis of Haematococcus pluvialis on astaxanthin biosynthesis in response to irradiation with red or blue LED wavelength.

Changsu Lee, Joon-Woo Ahn, Jin-Baek Kim, Jee Young Kim, Yoon-E Choi

Abstract read
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In one paragraph

Article in World journal of microbiology & biotechnology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 49 citations in OpenAlex.

  1. Review
  2. Review
  3. Sensing a rainbow of colors: algal photoreceptors.Frontiers in plant science · 2025
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  9. Cultivation of the microalgaeFrontiers in bioengineering and biotechnology · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Changsu LeeMicrobiology and Functionality Research Group, World Institute of Kimchi, Gwangju, 61755, Republic of Korea.
Joon-Woo AhnAdvanced Radiation Technology Institute, Korea Atomic Energy Research Institute, 1266 Sinjeong, Jeongeup, Jeonbuk, 580-185, Republic of Korea.
Jin-Baek KimAdvanced Radiation Technology Institute, Korea Atomic Energy Research Institute, 1266 Sinjeong, Jeongeup, Jeonbuk, 580-185, Republic of Korea.
Jee Young KimDivision of Environmental Science & Ecological Engineering, Korea University, Seoul, 02841, Republic of Korea.
Yoon-E ChoiDivision of Environmental Science & Ecological Engineering, Korea University, Seoul, 02841, Republic of Korea. yechoi@korea.ac.kr.
Korea University · KRKorea Atomic Energy Research Institute · KRWorld Institute of Kimchi · KR

Funding

Korea Basic Science Institute Project No. C38703National Research Foundation of Korea 2016R1D1A1B03932773
6 · The paper itself

Abstract

The unicellular green microalga Haematococcus pluvialis has the highest content of the natural antioxidant, astaxanthin. Previously, it was determined that astaxanthin accumulation in H. pluvialis could be induced by blue-wavelength irradiation; however, the molecular mechanism remains unknown. The present study aimed to compare the transcriptome of H. pluvialis, with respect to astaxanthin biosynthesis, under the monochromatic red (660 nm) or blue (450 nm) light-emitting diode (LED) irradiation. Among a total of 165,372 transcripts, we identified 67,703 unigenes, of which 2245 and 171 were identified as differentially expressed genes (DEGs) in response to blue and red irradiation, respectively. Interestingly, expressional changes of blue light receptor cryptochromes were detected in response to blue and/or red LED irradiation in H. pluvialis, which may directly and indirectly regulate astaxanthin biosynthesis. In accordance with this observation, expression of the BKT and CHY genes, which are part of the downstream section of the astaxanthin biosynthetic pathway, was significantly upregulated by blue LED irradiation compared with their expression under control white irradiation. Contrastingly, they were downregulated by red LED irradiation. Our transcriptome study provided molecular insights that highlighted the different of responses of H. pluvialis to red and blue irradiation, especially for astaxanthin biosynthesis.

Indexed as

LightTranscriptomeBiosynthetic PathwaysCell DivisionChlorophytaCluster AnalysisColorGene Expression ProfilingGene Expression Regulation, PlantGene OntologyGenes, PlantIndustrial MicrobiologyLightingReactive Oxygen SpeciesSequence Analysis, RNAUp-RegulationastaxanthineReactive Oxygen SpeciesXanthophyllsCarotenoid biosynthesisDifferentially expressed genesGene expressionLED wavelengthMicroalgae

Identifiers

PMID29916185
OpenAlexW2808746516

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.