Evidence map›Paper›PMID 29915599›Full record

ReviewFrontiers in immunology2018

Diversity in the Cow Ultralong CDR H3 Antibody Repertoire.

Jeremy K Haakenson, Ruiqi Huang, Vaughn V Smider

Open access · goldAbstract readReview
In one paragraph

Review in Frontiers in immunology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
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  7. The smallest functional antibody fragment: Ultralong CDR H3 antibody knob regions potently neutralize SARS-CoV-2.Proceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Jeremy K HaakensonDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, United States.
Ruiqi HuangDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, United States.
Vaughn V SmiderDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, United States.
Scripps Research Institute · US

Funding

Molecular and Structural Studies of Antibody Diversity MechanismsR01GM105826 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI SMIDER, VAUGHN VASIL · 2014 to 2021
$3.1M
Cow ultralong CDR3 antibodies targeting HIV gp120R21AI120791 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI SMIDER, VAUGHN VASIL · 2016 to 2017
$525k
NIAID NIH HHS R21 AI120791NIGMS NIH HHS R01 GM105826
6 · The paper itself

Abstract

Typical antibodies found in humans and mice usually have short CDR H3s and generally flat binding surfaces. However, cows possess a subset of antibodies with ultralong CDR H3s that can range up to 70 amino acids and form a unique "stalk and knob" structure, with the knob protruding far out of the antibody surface, where it has the potential to bind antigens with concave epitopes. Activation-induced cytidine deaminase (AID) has a proven role in diversifying antibody repertoires in humoral immunity, and it has been found to induce somatic hypermutation in bovine immunoglobulin genes both before and after contact with antigen. Due to limited use of variable and diversity genes in the V(D)J recombination events that produce ultralong CDR H3 antibodies in cows, the diversity in the bovine ultralong antibody repertoire has been proposed to rely on AID-induced mutations targeted to the IGHD8-2 gene that encodes the entire knob region. In this review, we discuss the genetics, structures, and diversity of bovine ultralong antibodies, as well as the role of AID in creating a diverse antibody repertoire.

Indexed as

Antibody DiversityGenetic VariationAnimalsAntibodiesAntigensCattleComplementarity Determining RegionsEvolution, MolecularGene Expression RegulationOrgan SpecificityProtein BindingStructure-Activity RelationshipV(D)J RecombinationAntibodiesAntigensComplementarity Determining Regionsactivation-induced cytidine deaminaseantibodyantibody repertoirecow immunoglobulinultralong CDRH3

Identifiers

PMID29915599
PMCPMC5994613
OpenAlexW2804202559

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.