Evidence map›Paper›PMID 29915173›Full record

ArticleNature communications2018

Biosynthesis of thiocarboxylic acid-containing natural products.

Liao-Bin Dong, Jeffrey D Rudolf, Dingding Kang, Nan Wang, Cyndi Qixin He, Youchao Deng, Yong Huang, K N Houk, Yanwen Duan, Ben Shen

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
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  4. Discovery of a novel methionine biosynthetic routeApplied and environmental microbiology · 2024
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  7. Review
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  11. Review
  12. Bacterial terpenome.Natural product reports · 2021
    Review
  13. Article
  14. Cryptic Sulfur Incorporation in Thioangucycline Biosynthesis.Angewandte Chemie (International ed. in English) · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Sulfur incorporation into biomolecules: recent advances.Critical reviews in biochemistry and molecular biology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Liao-Bin DongDepartment of Chemistry, The Scripps Research Institute, Jupiter, FL, 33458, USA.ORCID http://orcid.org/0000-0002-2943-1299
Jeffrey D RudolfDepartment of Chemistry, The Scripps Research Institute, Jupiter, FL, 33458, USA.ORCID http://orcid.org/0000-0003-2718-9651
Dingding KangXiangya International Academy of Translational Medicine, Central South University, Changsha, Hunan, 410013, China.
Nan WangDepartment of Chemistry, The Scripps Research Institute, Jupiter, FL, 33458, USA.
Cyndi Qixin HeDepartment of Chemistry and Biochemistry, University of California, Los Angeles, CA, 90095, USA.
Youchao DengXiangya International Academy of Translational Medicine, Central South University, Changsha, Hunan, 410013, China.
Yong HuangXiangya International Academy of Translational Medicine, Central South University, Changsha, Hunan, 410013, China.
K N HoukDepartment of Chemistry and Biochemistry, University of California, Los Angeles, CA, 90095, USA.
Yanwen DuanXiangya International Academy of Translational Medicine, Central South University, Changsha, Hunan, 410013, China.
Ben ShenDepartment of Chemistry, The Scripps Research Institute, Jupiter, FL, 33458, USA. shenb@scripps.edu.ORCID http://orcid.org/0000-0002-9750-5982
Central South University · CNScripps Research Institute · USUniversity of California, Los Angeles · US

Funding

Discovery and biosynthesis of diterpenoid natural products in actinomycetalsR01GM114353 · NIGMS · SCRIPPS FLORIDA · PI SHEN, BEN · 2016 to 2019
$1.8M
NIGMS NIH HHS R01 GM114353U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) GM114353
6 · The paper itself

Abstract

Thiocarboxylic acid-containing natural products are rare and their biosynthesis and biological significance remain unknown. Thioplatensimycin (thioPTM) and thioplatencin (thioPTN), thiocarboxylic acid congeners of the antibacterial natural products platensimycin (PTM) and platencin (PTN), were recently discovered. Here we report the biosynthetic origin of the thiocarboxylic acid moiety in thioPTM and thioPTN. We identify a thioacid cassette encoding two proteins, PtmA3 and PtmU4, responsible for carboxylate activation by coenzyme A and sulfur transfer, respectively. ThioPTM and thioPTN bind tightly to β-ketoacyl-ACP synthase II (FabF) and retain strong antibacterial activities. Density functional theory calculations of binding and solvation free energies suggest thioPTM and thioPTN bind to FabF more favorably than PTM and PTN. Additionally, thioacid cassettes are prevalent in the genomes of bacteria, implicating that thiocarboxylic acid-containing natural products are underappreciated. These results suggest that thiocarboxylic acid, as an alternative pharmacophore, and thiocarboxylic acid-containing natural products may be considered for future drug discovery.

Indexed as

Biological ProductsAdamantaneAminobenzoatesAminophenolsAnilidesEscherichia coliMultigene FamilyPolycyclic CompoundsStreptomycesSulfurAdamantaneAminobenzoatesAminophenolsAnilidesBiological ProductsplatencinplatensimycinPolycyclic CompoundsSulfur

Identifiers

PMID29915173
PMCPMC6006322
OpenAlexW2808715857

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.