Evidence map›Paper›PMID 29915083›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Early loss of mitochondrial complex I and rewiring of glutathione metabolism in renal oncocytoma.

Raj K Gopal, Sarah E Calvo, Angela R Shih, Frances L Chaves, Declan McGuone, Eran Mick, Kerry A Pierce, Yang Li, Andrea Garofalo, Eliezer M Van Allen and 3 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
9.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 110 citations in OpenAlex.

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  11. Stroke and vascular neurology · 2025
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  17. Pediatric Chordoma: A Tale of Two Genomes.Molecular cancer research : MCR · 2024
    Article
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11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Raj K GopalHoward Hughes Medical Institute and Department of Molecular Biology, Massachusetts General Hospital, Boston, MA 02114.
Sarah E CalvoHoward Hughes Medical Institute and Department of Molecular Biology, Massachusetts General Hospital, Boston, MA 02114.
Angela R ShihDepartment of Pathology, Massachusetts General Hospital, Boston, MA 02114.
Frances L ChavesMolecular Pathology Unit, Massachusetts General Hospital, Boston, MA 02114.
Declan McGuoneDepartment of Pathology, Massachusetts General Hospital, Boston, MA 02114.
Eran MickHoward Hughes Medical Institute and Department of Molecular Biology, Massachusetts General Hospital, Boston, MA 02114.
Kerry A PierceBroad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA 02142.ORCID 0000-0001-8078-640X
Yang LiHoward Hughes Medical Institute and Department of Molecular Biology, Massachusetts General Hospital, Boston, MA 02114.
Andrea GarofaloBroad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA 02142.
Eliezer M Van AllenBroad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA 02142.
Clary B ClishBroad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA 02142.
Esther OlivaDepartment of Pathology, Massachusetts General Hospital, Boston, MA 02114.
Vamsi K MoothaHoward Hughes Medical Institute and Department of Molecular Biology, Massachusetts General Hospital, Boston, MA 02114; vamsi@hms.harvard.edu.
Broad Institute · USMassachusetts General Hospital · USHoward Hughes Medical Institute · US

Funding

Treating the P13-Kinase/AKTP50CA101942 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI David McDermott · 2003 to 2026
$53.4M
ROLE OF DIETARY CONSTITUENTS ON GENE EXPRESSION IN INTESTINAL EPITHELIUMP30DK040561 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI Elizabeth Austen Lawson, Takara Leah Stanley · 1994 to 2026
$31.6M
Howard Hughes Medical InstituteNCI NIH HHS P50 CA101942NIDDK NIH HHS P30 DK040561
6 · The paper itself

Abstract

Renal oncocytomas are benign tumors characterized by a marked accumulation of mitochondria. We report a combined exome, transcriptome, and metabolome analysis of these tumors. Joint analysis of the nuclear and mitochondrial (mtDNA) genomes reveals loss-of-function mtDNA mutations occurring at high variant allele fractions, consistent with positive selection, in genes encoding complex I as the most frequent genetic events. A subset of these tumors also exhibits chromosome 1 loss and/or cyclin D1 overexpression, suggesting they follow complex I loss. Transcriptome data revealed that many pathways previously reported to be altered in renal oncocytoma were simply differentially expressed in the tumor's cell of origin, the distal nephron, compared with other nephron segments. Using a heuristic approach to account for cell-of-origin bias we uncovered strong expression alterations in the gamma-glutamyl cycle, including glutathione synthesis (increased

Indexed as

Adenoma, OxyphilicGlutathioneKidney NeoplasmsMitochondriaCell SurvivalChromosomes, Human, Pair 1Cyclin D1DNA, MitochondrialDNA, NeoplasmElectron Transport Complex IFemaleGene Expression ProfilingHumansMaleNeoplasm ProteinsCCND1 protein, humanCyclin D1DNA, MitochondrialDNA, NeoplasmElectron Transport Complex IGlutathioneNeoplasm Proteinscomplex IglutathionemtDNAoncocytomaγ-glutamyl cycle

Identifiers

PMID29915083
PMCPMC6142220
OpenAlexW2809035671

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.