Evidence map›Paper›PMID 29915081›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Error-prone protein synthesis in parasites with the smallest eukaryotic genome.

Sergey V Melnikov, Keith D Rivera, Denis Ostapenko, Arthur Makarenko, Neil D Sanscrainte, James J Becnel, Mark J Solomon, Catherine Texier, Darryl J Pappin, Dieter Söll

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 38 citations in OpenAlex.

  1. Review
  2. Article
  3. Ancestral archaea expanded the genetic code with pyrrolysine.The Journal of biological chemistry · 2022
    Article
  4. Paromomycin ReducesMicroorganisms · 2022
    Article
  5. Article
  6. Article
  7. Impact of Genome Reduction in Microsporidia.Experientia supplementum (2012) · 2022
    Article
  8. Article
  9. Bacterial translation machinery for deliberate mistranslation of the genetic code.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  10. Article
  11. Article
  12. Exploiting evolutionary trade-offs for posttreatment management of drug-resistant populations.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Review
  19. Article
  20. Loss of protein synthesis quality control in host-restricted organisms.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Sergey V MelnikovDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520.
Keith D RiveraCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724.
Denis OstapenkoDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520.
Arthur MakarenkoCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724.
Neil D SanscrainteCenter for Medical, Agricultural, and Veterinary Entomology, Agricultural Research Service, US Department of Agriculture, Gainesville, FL 32608.
James J BecnelCenter for Medical, Agricultural, and Veterinary Entomology, Agricultural Research Service, US Department of Agriculture, Gainesville, FL 32608.
Mark J SolomonDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520.
Catherine TexierLaboratoire Microorganismes, Génome et Environement, Université Clermont Auvergne, CNRS, F-63000 Clermont-Ferrand, France.
Darryl J PappinCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724.
Dieter SöllDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520; dieter.soll@yale.edu.
Yale University · USCold Spring Harbor Laboratory · USAgricultural Research Service · USCenter for Medical, Agricultural and Veterinary Entomology · USUniversity of Clermont Auvergne · FR

Funding

Single-Cell Biology Shared ResourceP30CA045508 · NCI · COLD SPRING HARBOR LABORATORY · PI John Edward Moses · 1987 to 2026
$118.9M
TRANSFER RNAR01GM022854 · NIGMS · YALE UNIVERSITY · PI SOLL, DIETER · 1985 to 2016
$21.3M
Studies of Transfer RNAR35GM122560 · NIGMS · YALE UNIVERSITY · PI SOLL, DIETER · 2017 to 2022
$5.6M
NCI NIH HHS P30 CA045508NIGMS NIH HHS R01 GM022854NIGMS NIH HHS R35 GM122560
6 · The paper itself

Abstract

Microsporidia are parasitic fungi-like organisms that invade the interior of living cells and cause chronic disorders in a broad range of animals, including humans. These pathogens have the tiniest known genomes among eukaryotic species, for which they serve as a model for exploring the phenomenon of genome reduction in obligate intracellular parasites. Here we report a case study to show an apparent effect of overall genome reduction on the primary structure and activity of aminoacyl-tRNA synthetases, indispensable cellular proteins required for protein synthesis. We find that most microsporidian synthetases lack regulatory and eukaryote-specific appended domains and have a high degree of sequence variability in tRNA-binding and catalytic domains. In one synthetase, LeuRS, an apparent sequence degeneration annihilates the editing domain, a catalytic center responsible for the accurate selection of leucine for protein synthesis. Unlike accurate LeuRS synthetases from other eukaryotic species, microsporidian LeuRS is error-prone: apart from leucine, it occasionally uses its near-cognate substrates, such as norvaline, isoleucine, valine, and methionine. Mass spectrometry analysis of the microsporidium

Indexed as

Amino Acyl-tRNA SynthetasesFungal ProteinsGenome, FungalMicrosporidaProtein BiosynthesisRNA, FungalRNA, TransferAmino Acyl-tRNA SynthetasesFungal ProteinsRNA, FungalRNA, Transferaminoacyl-tRNA synthetasesgenome erosionMicrosporidiamistranslationMuller’s ratchet

Identifiers

PMID29915081
PMCPMC6142209
OpenAlexW2808933137

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.