Evidence map›Paper›PMID 29914084›Full record

ArticleGenes2018

Decision Variants for the Automatic Determination of Optimal Feature Subset in RF-RFE.

Qi Chen, Zhaopeng Meng, Xinyi Liu, Qianguo Jin, Ran Su

Abstract read
In one paragraph

Article in Genes, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed.

  1. Article
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  9. Role of fatty acid metabolism-related genes in periodontitis based on machine learning and bioinformatics analysis.Hua xi kou qiang yi xue za zhi = Huaxi kouqiang yixue zazhi = West China journal of stomatology · 2024
    Article
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  11. AI-Powered Mining of Highly Customized and Superior ESIPT-Based Fluorescent Probes.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Qi ChenSchool of Computer Software, Tianjin University, Tianjin 300350, China. joannaxiaoqi@163.com.
Zhaopeng MengSchool of Computer Software, Tianjin University, Tianjin 300350, China. mengzp@tju.edu.cn.
Xinyi LiuSchool of Computer Software, Tianjin University, Tianjin 300350, China. xinyiliu@tju.edu.cn.
Qianguo JinSchool of Computer Software, Tianjin University, Tianjin 300350, China. qgking@tju.edu.cn.
Ran SuSchool of Computer Software, Tianjin University, Tianjin 300350, China. ran.su@tju.edu.cn.ORCID 0000-0001-5922-0364

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Feature selection, which identifies a set of most informative features from the original feature space, has been widely used to simplify the predictor. Recursive feature elimination (RFE), as one of the most popular feature selection approaches, is effective in data dimension reduction and efficiency increase. A ranking of features, as well as candidate subsets with the corresponding accuracy, is produced through RFE. The subset with highest accuracy (HA) or a preset number of features (PreNum) are often used as the final subset. However, this may lead to a large number of features being selected, or if there is no prior knowledge about this preset number, it is often ambiguous and subjective regarding final subset selection. A proper decision variant is in high demand to automatically determine the optimal subset. In this study, we conduct pioneering work to explore the decision variant after obtaining a list of candidate subsets from RFE. We provide a detailed analysis and comparison of several decision variants to automatically select the optimal feature subset. Random forest (RF)-recursive feature elimination (RF-RFE) algorithm and a voting strategy are introduced. We validated the variants on two totally different molecular biology datasets, one for a toxicogenomic study and the other one for protein sequence analysis. The study provides an automated way to determine the optimal feature subset when using RF-RFE.

Indexed as

decision variantfeature selectionrandom forestRFEvoting

Identifiers

PMID29914084
PMCPMC6027449

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.