Evidence map›Paper›PMID 29912941›Full record

ArticlePloS one2018

Structural definition of hSP-D recognition of Salmonella enterica LPS inner core oligosaccharides reveals alternative binding modes for the same LPS.

Jamie R Littlejohn, Ruben F da Silva, William A Neale, Carrie C Smallcombe, Howard W Clark, Rose-Marie A Mackay, Alastair S Watson, Jens Madsen, Derek W Hood, Ian Burns and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
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  14. Respiratory viral infections in the elderly.Therapeutic advances in respiratory disease
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Jamie R LittlejohnSchool of Life Sciences, Keele University, Staffordshire, United Kingdom.
Ruben F da SilvaSchool of Life Sciences, Keele University, Staffordshire, United Kingdom.
William A NealeSchool of Life Sciences, Keele University, Staffordshire, United Kingdom.ORCID 0000-0002-5992-8239
Carrie C SmallcombeSchool of Life Sciences, Keele University, Staffordshire, United Kingdom.ORCID 0000-0003-4174-0251
Howard W ClarkUniversity of Southampton, Department of Child Health, Division of Clinical and Experimental Sciences, Sir Henry Wellcome Laboratories, Southampton General Hospital, Southampton, United Kingdom.ORCID 0000-0001-7354-2028
Rose-Marie A MackayUniversity of Southampton, Department of Child Health, Division of Clinical and Experimental Sciences, Sir Henry Wellcome Laboratories, Southampton General Hospital, Southampton, United Kingdom.ORCID 0000-0002-9493-9654
Alastair S WatsonUniversity of Southampton, Department of Child Health, Division of Clinical and Experimental Sciences, Sir Henry Wellcome Laboratories, Southampton General Hospital, Southampton, United Kingdom.
Jens MadsenUniversity of Southampton, Department of Child Health, Division of Clinical and Experimental Sciences, Sir Henry Wellcome Laboratories, Southampton General Hospital, Southampton, United Kingdom.ORCID 0000-0003-1664-7645
Derek W HoodMammalian Genetics Unit, MRC Harwell Institute, Harwell Science and Innovation Campus, Oxfordshire, United Kingdom.ORCID 0000-0003-4600-5416
Ian BurnsSchool of Life Sciences, Keele University, Staffordshire, United Kingdom.
Trevor J GreenhoughSchool of Life Sciences, Keele University, Staffordshire, United Kingdom.ORCID 0000-0002-2180-5110
Annette K ShriveSchool of Life Sciences, Keele University, Staffordshire, United Kingdom.
Keele University · GBSouthampton General Hospital · GBMary Lyon Centre at MRC Harwell · GB

Funding

Medical Research Council MC_UP_1503/1
6 · The paper itself

Abstract

The crystal structures of a biologically and therapeutically active recombinant homotrimeric fragment of native human SP-D (hSP-D) complexed with the inner core oligosaccharide of the Salmonella enterica sv Minnesota rough strains R5 and R7 (rough mutant chemotypes Rc and Rd1) have been determined. The structures reveal that hSP-D specifically and preferentially targets the LPS inner core via the innermost conserved Hep-Kdo pair with the flexibility for alternative recognition when this preferred epitope is not available for binding. Hep-Kdo binding is achieved through calcium dependent recognition of the heptose dihydroxyethyl side chain coupled with specific interactions between the Kdo and the binding site flanking residues Arg343 and Asp325 with evidence for an extended binding site for LPS inner cores containing multiple Kdo residues. In one subunit of the R5-bound structure this preferred mode of binding is precluded by the crystal lattice and oligosaccharide is bound through the terminal inner core glucose. The structures presented here thus provide unique multiple insights into the recognition and binding of bacterial LPS by hSP-D. Not only is it demonstrated that hSP-D targets the highly conserved LPS proximal inner core Hep-Kdo motif, but also that hSP-D can recognise either terminal or non-terminal sugars and has the flexibility and versatility to adopt alternative strategies for bacterial recognition, utilising alternative LPS epitopes when the preferred inner core Hep-Kdo disaccharide is not available for binding.

Indexed as

Binding SitesEpitopesLipopolysaccharidesMolecular StructureOligosaccharidesPulmonary Surfactant-Associated Protein DRecombinant ProteinsSalmonella entericaEpitopesLipopolysaccharidesOligosaccharidesPulmonary Surfactant-Associated Protein DRecombinant Proteins

Identifiers

PMID29912941
PMCPMC6005524
OpenAlexW2809070812

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.