Evidence map›Paper›PMID 29912940›Full record

ArticlePLoS neglected tropical diseases2018

Mapping dengue risk in Singapore using Random Forest.

Janet Ong, Xu Liu, Jayanthi Rajarethinam, Suet Yheng Kok, Shaohong Liang, Choon Siang Tang, Alex R Cook, Lee Ching Ng, Grace Yap

Abstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed, 4 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 4 syntheses or guidelines pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Janet OngEnvironmental Health Institute, National Environment Agency, Singapore.ORCID 0000-0002-0568-4742
Xu LiuEnvironmental Health Institute, National Environment Agency, Singapore.
Jayanthi RajarethinamEnvironmental Health Institute, National Environment Agency, Singapore.
Suet Yheng KokEnvironmental Health Institute, National Environment Agency, Singapore.
Shaohong LiangEnvironmental Health Institute, National Environment Agency, Singapore.
Choon Siang TangEnvironmental Public Health Operations, National Environment Agency, Singapore.
Alex R CookSaw Swee Hock School of Public Health, National University of Singapore and National University Health System, Singapore.
Lee Ching NgEnvironmental Health Institute, National Environment Agency, Singapore.ORCID 0000-0001-8792-318X
Grace YapEnvironmental Health Institute, National Environment Agency, Singapore.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSingapore experiences endemic dengue, with 2013 being the largest outbreak year known to date, culminating in 22,170 cases. Given the limited resources available, and that vector control is the key approach for prevention in Singapore, it is important that public health professionals know where resources should be invested in. This study aims to stratify the spatial risk of dengue transmission in Singapore for effective deployment of resources. METHODOLOGY/PRINCIPAL

findingsRandom Forest was used to predict the risk rank of dengue transmission in 1km2 grids, with dengue, population, entomological and environmental data. The predicted risk ranks are categorized and mapped to four color-coded risk groups for easy operation application. The risk maps were evaluated with dengue case and cluster data. Risk maps produced by Random Forest have high accuracy. More than 80% of the observed risk ranks fell within the 80% prediction interval. The observed and predicted risk ranks were highly correlated ([Formula: see text]≥0.86, P <0.01). Furthermore, the predicted risk levels were in excellent agreement with case density, a weighted Kappa coefficient of more than 0.80 (P <0.01). Close to 90% of the dengue clusters occur in high risk areas, and the odds of cluster forming in high risk areas were higher than in low risk areas.

conclusionsThis study demonstrates the potential of Random Forest and its strong predictive capability in stratifying the spatial risk of dengue transmission in Singapore. Dengue risk map produced using Random Forest has high accuracy, and is a good surveillance tool to guide vector control operations.

Indexed as

Disease OutbreaksModels, StatisticalAedesAnimalsDengueHumansMosquito VectorsPublic HealthRiskSingapore

Identifiers

PMID29912940
PMCPMC6023234

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.