Evidence map›Paper›PMID 29912683›Full record

ArticleEmerging infectious diseases2018

Diversity of Influenza A(H5N1) Viruses in Infected Humans, Northern Vietnam, 2004-2010.

Hirotaka Imai, Jorge M Dinis, Gongxun Zhong, Louise H Moncla, Tiago J S Lopes, Ryan McBride, Andrew J Thompson, Wenjie Peng, Mai Thi Q Le, Anthony Hanson and 11 more

Open access · diamondAbstract readHistorical Article
In one paragraph

Article in Emerging infectious diseases, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Emergence and adaptive evolution of Nipah virus.Transboundary and emerging diseases · 2020
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 5 institutions in 3 countries.

Hirotaka Imai
Jorge M Dinis
Gongxun Zhong
Louise H Moncla
Tiago J S Lopes
Ryan McBride
Andrew J Thompson
Wenjie Peng
Mai Thi Q Le
Anthony Hanson
Michael Lauck
Yuko Sakai-Tagawa
Shinya Yamada
Julie Eggenberger
David H O'Connor
Yasuo Suzuki
Masato Hatta
James C Paulson
Gabriele Neumann
Thomas C Friedrich
Yoshihiro Kawaoka
The University of Tokyo · JPChubu University · JPNational Institute Of Hygiene And Epidemiology · VNScripps Research Institute · USUniversity of Wisconsin–Madison · US

Funding

WNPRC Supplemental Request for Nonhuman Primate Enclosures to Equip HIV/AIDS-Related Research FacilitiesP51OD011106 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI Dorota A. Grejner-Brzezinska · 2012 to 2026
$150.7M
Transmissibility of avian influenza viruses in mammalsR01AI069274 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI KAWAOKA, YOSHIHIRO · 2006 to 2016
$5.5M
Influenza virus receptors on human airway epithelial cellsR01AI114730 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI PAULSON, JAMES C · 2015 to 2023
$5.1M
Mechanisms of influenza transmission bottlenecks: impact on viral evolutionR01AI125392 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI FRIEDRICH, THOMAS C., MEHLE, ANDREW · 2017 to 2021
$3.4M
Virology Training ProgramT32AI078985 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI LAMBERT, PAUL F. · 2009 to 2018
$3.3M
NIAID NIH HHS R01 AI069274NIAID NIH HHS R01 AI114730NIAID NIH HHS R01 AI125392NIAID NIH HHS T32 AI078985NIH HHS P51 OD011106
6 · The paper itself

Abstract

Influenza viruses exist in each host as a collection of genetically diverse variants, which might enhance their adaptive potential. To assess the genetic and functional diversity of highly pathogenic avian influenza A(H5N1) viruses within infected humans, we used deep-sequencing methods to characterize samples obtained from infected patients in northern Vietnam during 2004-2010 on different days after infection, from different anatomic sites, or both. We detected changes in virus genes that affected receptor binding, polymerase activity, or interferon antagonism, suggesting that these factors could play roles in influenza virus adaptation to humans. However, the frequency of most of these mutations remained low in the samples tested, implying that they were not efficiently selected within these hosts. Our data suggest that adaptation of influenza A(H5N1) viruses is probably stepwise and depends on accumulating combinations of mutations that alter function while maintaining fitness.

Indexed as

Genetic VariationAnimalsCell LineGenes, ViralHemagglutinin Glycoproteins, Influenza VirusHistory, 21st CenturyHumansInfluenza A Virus, H5N1 SubtypeInfluenza, HumanMolecular TypingPhylogenyPopulation SurveillanceVietnamViral TropismHemagglutinin Glycoproteins, Influenza Virusadaptationgenetic diversityH5N1 subtypehumansinfluenzainfluenza virusrespiratory infectionsVietnamviruses

Identifiers

PMID29912683
PMCPMC6038741
OpenAlexW2806041621

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.