Evidence map›Paper›PMID 29909963›Full record

ArticleAmerican journal of human genetics2018

Comprehensive Cancer-Predisposition Gene Testing in an Adult Multiple Primary Tumor Series Shows a Broad Range of Deleterious Variants and Atypical Tumor Phenotypes.

James Whitworth, Philip S Smith, Jose-Ezequiel Martin, Hannah West, Andrea Luchetti, Faye Rodger, Graeme Clark, Keren Carss, Jonathan Stephens, Kathleen Stirrups and 34 more

Abstract read
In one paragraph

Article in American journal of human genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed.

  1. Multiple Primary Cancer Incidence by County-Level Smoking Prevalence among U.S. Cancer Survivors.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2026
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  16. Article
  17. Hereditary cancer syndromes.World journal of clinical oncology · 2023
    Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

44 authors.

James WhitworthUniversity of Cambridge Department of Medical Genetics, NIHR Cambridge Biomedical Research Centre, and Cancer Research UK Cambridge Centre, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK.
Philip S SmithUniversity of Cambridge Department of Medical Genetics, NIHR Cambridge Biomedical Research Centre, and Cancer Research UK Cambridge Centre, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK.
Jose-Ezequiel MartinUniversity of Cambridge Department of Medical Genetics, NIHR Cambridge Biomedical Research Centre, and Cancer Research UK Cambridge Centre, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK.
Hannah WestUniversity of Cambridge Department of Medical Genetics, NIHR Cambridge Biomedical Research Centre, and Cancer Research UK Cambridge Centre, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK.
Andrea LuchettiUniversity of Cambridge Department of Medical Genetics, NIHR Cambridge Biomedical Research Centre, and Cancer Research UK Cambridge Centre, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK.
Faye RodgerUniversity of Cambridge Department of Medical Genetics, NIHR Cambridge Biomedical Research Centre, and Cancer Research UK Cambridge Centre, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK.
Graeme ClarkUniversity of Cambridge Department of Medical Genetics, NIHR Cambridge Biomedical Research Centre, and Cancer Research UK Cambridge Centre, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK.
Keren CarssNIHR BioResource, Cambridge University Hospitals, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK; Department of Haematology, University of Cambridge, NHS Blood and Transplant Centre, Cambridge Biomedical Campus, Cambridge CB2 0PT, UK.
Jonathan StephensNIHR BioResource, Cambridge University Hospitals, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK; Department of Haematology, University of Cambridge, NHS Blood and Transplant Centre, Cambridge Biomedical Campus, Cambridge CB2 0PT, UK.
Kathleen StirrupsNIHR BioResource, Cambridge University Hospitals, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK; Department of Haematology, University of Cambridge, NHS Blood and Transplant Centre, Cambridge Biomedical Campus, Cambridge CB2 0PT, UK.
Chris PenkettNIHR BioResource, Cambridge University Hospitals, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK; Department of Haematology, University of Cambridge, NHS Blood and Transplant Centre, Cambridge Biomedical Campus, Cambridge CB2 0PT, UK.
Rutendo MapetaNIHR BioResource, Cambridge University Hospitals, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK; Department of Haematology, University of Cambridge, NHS Blood and Transplant Centre, Cambridge Biomedical Campus, Cambridge CB2 0PT, UK.
Sofie AshfordNIHR BioResource, Cambridge University Hospitals, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK.
Karyn MegyNIHR BioResource, Cambridge University Hospitals, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK; Department of Haematology, University of Cambridge, NHS Blood and Transplant Centre, Cambridge Biomedical Campus, Cambridge CB2 0PT, UK.
Hassan ShakeelUniversity of Cambridge Department of Medical Genetics, NIHR Cambridge Biomedical Research Centre, and Cancer Research UK Cambridge Centre, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK.
Munaza AhmedDepartment of Clinical Genetics, Princess Anne Hospital, Southampton SO16 5YA, UK; North East Thames Regional Genetics Service, Great Ormond Street Hospital for Children, London WC1N 3JH, UK.
Julian AdlardYorkshire Regional Genetics Service, Chapel Allerton Hospital, Leeds LS7 4SA, UK.
Julian BarwellDepartment of Clinical Genetics, University Hospitals of Leicester, Leicester Royal Infirmary, Leicester LE1 5WW, UK.
Carole BrewerPeninsula Clinical Genetics, Royal Devon & Exeter Hospital, Exeter EX1 2ED, UK.
Ruth T CaseyUniversity of Cambridge Department of Medical Genetics, NIHR Cambridge Biomedical Research Centre, and Cancer Research UK Cambridge Centre, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK.
Ruth ArmstrongUniversity of Cambridge Department of Medical Genetics, NIHR Cambridge Biomedical Research Centre, and Cancer Research UK Cambridge Centre, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK; NIHR BioResource, Cambridge University Hospitals, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK; East Anglian Medical Genetics Service, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK.
Trevor ColeWest Midlands Regional Genetics Service and Birmingham Health Partners, Birmingham Women's and Children's Hospitals NHS Foundation Trust, Birmingham B15 2TG, UK.
Dafydd Gareth EvansManchester Centre for Genomic Medicine, Division of Evolution and Genomic Sciences, University of Manchester, Manchester Academic Health Science Centre, St. Mary's Hospital, Manchester M13 9WL, UK.
Florentia FostiraMolecular Diagnostics Laboratory, National Centre of Scientific Research "Demokritos," Athens, Greece.
Lynn GreenhalghDepartment of Clinical Genetics, Liverpool Women's Hospital, Liverpool L8 7SS, UK.
Helen HansonDepartment of Clinical Genetics, St. George's Hospital, London SW17 0QT, UK.
Alex HendersonNorthern Genetics Service, Newcastle upon Tyne Hospitals, International Centre for Life, Newcastle upon Tyne NE1 3BZ, UK.
Jonathan HoffmanWest Midlands Regional Genetics Service and Birmingham Health Partners, Birmingham Women's and Children's Hospitals NHS Foundation Trust, Birmingham B15 2TG, UK.
Louise IzattDepartment of Clinical Genetics, Guy's and St. Thomas' Hospital, London SE1 9RT, UK.
Ajith KumarNorth East Thames Regional Genetics Service, Great Ormond Street Hospital for Children, London WC1N 3JH, UK.
Ava KwongDivision of Breast Surgery, University of Hong Kong, Pokfulam, Hong Kong; Hong Kong Hereditary Breast Cancer Family Registry, Shau Kei Wan, Hong Kong; Hong Kong Sanatorium and Hospital, Happy Valley, Hong Kong.
Fiona LallooManchester Centre for Genomic Medicine, Division of Evolution and Genomic Sciences, University of Manchester, Manchester Academic Health Science Centre, St. Mary's Hospital, Manchester M13 9WL, UK.
Kai Ren OngWest Midlands Regional Genetics Service and Birmingham Health Partners, Birmingham Women's and Children's Hospitals NHS Foundation Trust, Birmingham B15 2TG, UK.
Joan PatersonEast Anglian Medical Genetics Service, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK.
Soo-Mi ParkUniversity of Cambridge Department of Medical Genetics, NIHR Cambridge Biomedical Research Centre, and Cancer Research UK Cambridge Centre, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK; NIHR BioResource, Cambridge University Hospitals, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK; East Anglian Medical Genetics Service, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK.
Rakefet Chen-ShtoyermanClinical Genetics Institute, Kaplan Medical Center, Rehovot 76100, Israel; Hebrew University and Hadassah Medical Center, Jerusalem, Israel.
Claire SearleDepartment of Clinical Genetics, Nottingham University Hospitals, City Hospital, Nottingham NG5 1PB, UK.
Lucy SideDepartment of Clinical Genetics, Princess Anne Hospital, Southampton SO16 5YA, UK; North East Thames Regional Genetics Service, Great Ormond Street Hospital for Children, London WC1N 3JH, UK.
Anne-Bine SkytteDepartment of Clinical Genetics, Aarhus University Hospital, Aarhus 8200, Denmark.
Katie SnapeDepartment of Clinical Genetics, St. George's Hospital, London SW17 0QT, UK.
Emma R WoodwardManchester Centre for Genomic Medicine, Division of Evolution and Genomic Sciences, University of Manchester, Manchester Academic Health Science Centre, St. Mary's Hospital, Manchester M13 9WL, UK.
NIHR BioResource Rare Diseases ConsortiumNIHR BioResource, Cambridge University Hospitals, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK.
Marc D TischkowitzUniversity of Cambridge Department of Medical Genetics, NIHR Cambridge Biomedical Research Centre, and Cancer Research UK Cambridge Centre, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK; NIHR BioResource, Cambridge University Hospitals, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK.
Eamonn R MaherUniversity of Cambridge Department of Medical Genetics, NIHR Cambridge Biomedical Research Centre, and Cancer Research UK Cambridge Centre, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK; NIHR BioResource, Cambridge University Hospitals, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK. Electronic address: erm1000@medschl.cam.ac.uk.

Funding

British Heart Foundation FS/10/013/28073British Heart Foundation PG/15/103/31900Medical Research Council G0800671
6 · The paper itself

Abstract

Multiple primary tumors (MPTs) affect a substantial proportion of cancer survivors and can result from various causes, including inherited predisposition. Currently, germline genetic testing of MPT-affected individuals for variants in cancer-predisposition genes (CPGs) is mostly targeted by tumor type. We ascertained pre-assessed MPT individuals (with at least two primary tumors by age 60 years or at least three by 70 years) from genetics centers and performed whole-genome sequencing (WGS) on 460 individuals from 440 families. Despite previous negative genetic assessment and molecular investigations, pathogenic variants in moderate- and high-risk CPGs were detected in 67/440 (15.2%) probands. WGS detected variants that would not be (or were not) detected by targeted resequencing strategies, including low-frequency structural variants (6/440 [1.4%] probands). In most individuals with a germline variant assessed as pathogenic or likely pathogenic (P/LP), at least one of their tumor types was characteristic of variants in the relevant CPG. However, in 29 probands (42.2% of those with a P/LP variant), the tumor phenotype appeared discordant. The frequency of individuals with truncating or splice-site CPG variants and at least one discordant tumor type was significantly higher than in a control population (χ

Indexed as

AdultAgedBiomarkers, TumorFemaleGenetic Predisposition to DiseaseGenetic TestingGenetic VariationGerm-Line MutationHumansMaleMiddle AgedNeoplasms, Multiple PrimaryPhenotypeBiomarkers, Tumorcancer-predisposition syndromesgenetic testinginherited cancer geneticswhole-genome sequencing

Identifiers

PMID29909963
PMCPMC6037202

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.