Evidence map›Paper›PMID 29909755›Full record

ArticleAutophagy2018

A pseudo-receiver domain in Atg32 is required for mitophagy.

Xue Xia, Sarah Katzenell, Erin F Reinhart, Katherine M Bauer, Maria Pellegrini, Michael J Ragusa

Abstract read
In one paragraph

Article in Autophagy, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Yeast mitophagy: Unanswered questions.Biochimica et biophysica acta. General subjects · 2021
    Review
  6. Common Principles and Specific Mechanisms of Mitophagy from Yeast to Humans.International journal of molecular sciences · 2021
    Review
  7. Mitophagy in Human Diseases.International journal of molecular sciences · 2021
    Review
  8. Article
  9. Article
  10. Origin of the Autophagosome Membrane in Mammals.BioMed research international · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Xue Xiaa Department of Biochemistry & Cell Biology , Geisel School of Medicine at Dartmouth , Hanover , NH , USA.
Sarah Katzenellb Department of Chemistry , Dartmouth College , Hanover , NH , USA.
Erin F Reinhartb Department of Chemistry , Dartmouth College , Hanover , NH , USA.
Katherine M Bauera Department of Biochemistry & Cell Biology , Geisel School of Medicine at Dartmouth , Hanover , NH , USA.
Maria Pellegrinib Department of Chemistry , Dartmouth College , Hanover , NH , USA.
Michael J Ragusaa Department of Biochemistry & Cell Biology , Geisel School of Medicine at Dartmouth , Hanover , NH , USA.ORCID 0000-0002-0231-0876

Funding

Understanding the role of RNA-binding protein mutations in cancerP20GM113132 · NIGMS · DARTMOUTH COLLEGE · PI MADDEN, DEAN R · 2016 to 2025
$25.9M
NIGMS NIH HHS P20 GM113132
6 · The paper itself

Abstract

Mitochondria are targeted for degradation by mitophagy, a selective form of autophagy. In Saccharomyces cerevisiae, mitophagy is dependent on the autophagy receptor, Atg32, an outer mitochondrial membrane protein. Once activated, Atg32 recruits the autophagy machinery to mitochondria, facilitating mitochondrial capture in phagophores, the precursors to autophagosomes. However, the mechanism of Atg32 activation remains poorly understood. To investigate this crucial step in mitophagy regulation, we examined the structure of Atg32. We have identified a structured domain in Atg32 that is essential for the initiation of mitophagy, as it is required for the proteolysis of the C-terminal domain of Atg32 and the subsequent recruitment of Atg11. The solution structure of this domain was determined by NMR spectroscopy, revealing that Atg32 contains a previously undescribed pseudo-receiver (PsR) domain. Our data suggests that the PsR domain of Atg32 regulates Atg32 activation and the initiation of mitophagy. ABBREVIATIONS:

aimAtg8-interacting motif; GFP: green fluorescent protein; LIR: LC3-interacting region; NMR: nuclear magnetic resonance; NOESY: nuclear Overhauser effect spectroscopy; PDB: protein data bank; PsR: pseudo-receiver; RMSD: root-mean-square deviation.

Indexed as

MitophagyAmino Acid SequenceAutophagy-Related ProteinsNitrogenProtein DomainsReceptors, Cytoplasmic and NuclearSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsStructure-Activity RelationshipAtg32 protein, S cerevisiaeAutophagy-Related ProteinsNitrogenReceptors, Cytoplasmic and NuclearSaccharomyces cerevisiae ProteinsAtg32mitophagyNMR spectroscopysolution structureyeast

Identifiers

PMID29909755
PMCPMC6135581

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.