Evidence map›Paper›PMID 29909539›Full record

ArticleAMB Express2018

Development of a species-specific TaqMan-MGB real-time PCR assay to quantify Olsenella scatoligenes in pigs offered a chicory root-based diet.

Xiaoqiong Li, Bent Borg Jensen, Ole Højberg, Samantha Joan Noel, Nuria Canibe

Open access · goldAbstract read
In one paragraph

Article in AMB Express, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 2 countries.

Xiaoqiong LiDepartment of Animal Science, Faculty of Science and Technology, Aarhus University, Blichers Allé 20, P. O. Box 50, 8830, Tjele, Denmark.ORCID http://orcid.org/0000-0002-5424-9974
Bent Borg JensenDepartment of Animal Science, Faculty of Science and Technology, Aarhus University, Blichers Allé 20, P. O. Box 50, 8830, Tjele, Denmark.
Ole HøjbergDepartment of Animal Science, Faculty of Science and Technology, Aarhus University, Blichers Allé 20, P. O. Box 50, 8830, Tjele, Denmark.
Samantha Joan NoelDepartment of Animal Science, Faculty of Science and Technology, Aarhus University, Blichers Allé 20, P. O. Box 50, 8830, Tjele, Denmark.
Nuria CanibeDepartment of Animal Science, Faculty of Science and Technology, Aarhus University, Blichers Allé 20, P. O. Box 50, 8830, Tjele, Denmark. Nuria.Canibe@anis.au.dk.
Aarhus University · DK

Funding

Danish AgriFish Agency, Ministry of Food, Agriculture and Fisheries Project 3405-10-OP-00134
6 · The paper itself

Abstract

Olsenella scatoligenes is the only skatole-producing bacterium isolated from the pig gut. Skatole, produced from microbial degradation of l-tryptophan, is the main contributor to boar taint, an off-odor and off-flavor taint, released upon heating meat from some entire male pigs. An appropriate method for quantifying O. scatoligenes would help investigating the relationship between O. scatoligenes abundance and skatole concentration in the pig gut. Thus, the present study aimed at developing a TaqMan-MGB probe-based, species-specific qPCR assay for rapid quantification of O. scatoligenes. The use of a MGB probe allowed discriminating O. scatoligenes from other closely related species. Moreover, the assay allowed quantifying down to three target gene copies per PCR reaction using genomic DNA-constructed standards, or 1.5 × 10

Indexed as

Chicory rootMGB probeOlsenella scatoligenesqPCRSkatoleTaqMan

Identifiers

PMID29909539
PMCPMC6004268
OpenAlexW2807982005

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.