ArticleFunctional & integrative genomics2018
Genome-wide identification, expansion, and evolution analysis of homeobox genes and their expression profiles during root development in carrot.
Article in Functional & integrative genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed, 26 citations in OpenAlex.
- Transcriptome analysis reveals key regulatory genes for root growth related to potassium utilization efficiency in rapeseed (Frontiers in plant science · 2023Article
- Article
- Genome-Wide Identification, Expression, and Interaction Analysis of BEL-Like Homeodomain Gene Family in Peach.Biochemical genetics · 2022Article
- The Roles of BLH Transcription Factors in Plant Development and Environmental Response.International journal of molecular sciences · 2022Review
- Genome-wide association study and transcriptome analysis reveal key genes affecting root growth dynamics in rapeseed.Biotechnology for biofuels · 2021Article
- Mining for Candidate Genes Controlling Secondary Growth of the Carrot Storage Root.International journal of molecular sciences · 2020Article
- Over-expression of transcription factor ARK1 gene leads to down-regulation of lignin synthesis related genes in hybrid poplar '717'.Scientific reports · 2020Article
- Integrated mRNA and miRNA transcriptome analysis reveals a regulatory network for tuber expansion in Chinese yam (Dioscorea opposita).BMC genomics · 2020Article
- Genome-Wide DNA Methylation Analysis of SoybeanFrontiers in plant science · 2020Article
- Identification of Homeobox Genes Associated with Lignification and Their Expression Patterns in Bamboo Shoots.Biomolecules · 2019Article
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Authors and funding
6 authors at 1 institution in 1 country.
Funding
Abstract
The homeobox gene family, a large family represented by transcription factors, has been implicated in secondary growth, early embryo patterning, and hormone response pathways in plants. However, reports about the information and evolutionary history of the homeobox gene family in carrot are limited. In the present study, a total of 130 homeobox family genes were identified in the carrot genome. Specific codomain and phylogenetic analyses revealed that the genes were classified into 14 subgroups. Whole genome and proximal duplication participated in the homeobox gene family expansion in carrot. Purifying selection also contributed to the evolution of carrot homeobox genes. In Gene Ontology (GO) analysis, most members of the HD-ZIP III and IV subfamilies were found to have a lipid binding (GO:0008289) term. Most HD-ZIP III and IV genes also harbored a steroidogenic acute regulatory protein-related lipid transfer (START) domain. These results suggested that the HD-ZIP III and IV subfamilies might be related to lipid transfer. Transcriptome and quantitative real-time PCR (RT-qPCR) data indicated that members of the WOX and KNOX subfamilies were likely implicated in carrot root development. Our study provided a useful basis for further studies on the complexity and function of the homeobox gene family in carrot.
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