ArticleData in brief2018
Genome-scale DNA sequence data and the evolutionary history of placental mammals.
Article in Data in brief, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
10 citing papers in PubMed.
- IQ-TREE 3: phylogenomic inference software using complex evolutionary models.Molecular biology and evolution · 2026Article
- Estimating Genome-Wide Phylogenies Using Probabilistic Topic Modeling.Systematic biology · 2025Article
- The effectiveness of selection in a species affects the direction of amino acid frequency evolution.bioRxiv : the preprint server for biology · 2025Article
- MixtureFinder: Estimating DNA Mixture Models for Phylogenetic Analyses.Molecular biology and evolution · 2025Article
- nQMaker: Estimating Time Nonreversible Amino Acid Substitution Models.Systematic biology · 2022Article
- Assessing Confidence in Root Placement on Phylogenies: An Empirical Study Using Nonreversible Models for Mammals.Systematic biology · 2022Article
- mPartition: A Model-Based Method for Partitioning Alignments.Journal of molecular evolution · 2020Article
- New Methods to Calculate Concordance Factors for Phylogenomic Datasets.Molecular biology and evolution · 2020Article
- The Multispecies Coalescent Model Outperforms Concatenation Across Diverse Phylogenomic Data Sets.Systematic biology · 2020Article
- The effect of alignment uncertainty, substitution models and priors in building and dating the mammal tree of life.BMC evolutionary biology · 2019Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We present a genomic data set comprised of the coding DNA sequences of 5162 loci from 90 vertebrate species, including 82 mammals. The loci were aligned with their protein sequences. The aligned protein sequences were then back translated into their original DNA sequences. The alignments were further filtered to remove individual sequences from each alignment exhibiting long branches or other unusual features. The data is deposited in figshare (http://figshare.com/articles/cds_5162.zip/6031190) and will be useful as a test data set for large-scale phylogenomic analysis.
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Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.