Evidence map›Paper›PMID 29904340›Full record

ArticleFrontiers in molecular neuroscience2018

Cues to Opening Mechanisms From

Francesco Zonta, Damiano Buratto, Giulia Crispino, Andrea Carrer, Francesca Bruno, Guang Yang, Fabio Mammano, Sergio Pantano

Abstract read
In one paragraph

Article in Frontiers in molecular neuroscience, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Bridging Scales: Coarse-Grained Protein Models in Computational Biology.Advances in experimental medicine and biology · 2026
    Review
  2. Calcium Regulation of Connexin Hemichannels.International journal of molecular sciences · 2024
    Review
  3. Molecular Dynamics Simulation of Permeation Through Connexin Channels.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Construction of a Deep Neural Network Energy Function for Protein Physics.Journal of chemical theory and computation · 2022
    Article
  8. Article
  9. Article
  10. Dissecting the role of glutamine in seeding peptide aggregation.Computational and structural biotechnology journal · 2021
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Francesco ZontaShanghai Institute for Advanced Immunochemical Studies, ShanghaiTech University, Shanghai, China.
Damiano BurattoShanghai Institute for Advanced Immunochemical Studies, ShanghaiTech University, Shanghai, China.
Giulia CrispinoCNR Institute of Cell Biology and Neurobiology, Monterotondo, Italy.
Andrea CarrerCNR Institute of Cell Biology and Neurobiology, Monterotondo, Italy.
Francesca BrunoVenetian Institute of Molecular Medicine, Padua, Italy.
Guang YangShanghai Institute for Advanced Immunochemical Studies, ShanghaiTech University, Shanghai, China.
Fabio MammanoShanghai Institute for Advanced Immunochemical Studies, ShanghaiTech University, Shanghai, China.
Sergio PantanoGroup of Biomolecular Simulations, Institut Pasteur de Montevideo, Montevideo, Uruguay.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Connexin channels play numerous essential roles in virtually every organ by mediating solute exchange between adjacent cells, or between cytoplasm and extracellular milieu. Our understanding of the structure-function relationship of connexin channels relies on X-ray crystallographic data for human connexin 26 (hCx26) intercellular gap junction channels. Comparison of experimental data and molecular dynamics simulations suggests that the published structures represent neither fully-open nor closed configurations. To facilitate the search for alternative stable configurations, we developed a coarse grained (CG) molecular model of the hCx26 hemichannel and studied its responses to external electric fields. When challenged by a field of 0.06 V/nm, the hemichannel relaxed toward a novel configuration characterized by a widened pore and an increased bending of the second transmembrane helix (TM2) at the level of the conserved Pro87. A point mutation that inhibited such transition in our simulations impeded hemichannel opening in electrophysiology and dye uptake experiments conducted on HeLa tranfectants. These results suggest that the hCx26 hemichannel uses a global degree of freedom to transit between different configuration states, which may be shared among the whole connexin family.

Indexed as

coarse grained simulationsconformational changeconnexinCx26electrophysiologygap junction hemichannelsSIRAH force field

Identifiers

PMID29904340
PMCPMC5990870

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.