Evidence map›Paper›PMID 29903816›Full record

ArticleGenome announcements2018

Sequences of Zika Virus Genomes from a Pediatric Cohort in Nicaragua.

Lauren M Oldfield, Nadia Fedorova, Vinita Puri, Susmita Shrivastava, Paolo Amedeo, Alan Durbin, Iara Rocchi, Torrey Williams, Reed S Shabman, Gene S Tan and 6 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Genome announcements, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Lauren M OldfieldJ. Craig Venter Institute, Rockville, Maryland, USA.
Nadia FedorovaJ. Craig Venter Institute, Rockville, Maryland, USA.
Vinita PuriJ. Craig Venter Institute, Rockville, Maryland, USA.
Susmita ShrivastavaJ. Craig Venter Institute, Rockville, Maryland, USA.
Paolo AmedeoJ. Craig Venter Institute, Rockville, Maryland, USA.
Alan DurbinJ. Craig Venter Institute, La Jolla, California, USA.
Iara RocchiJ. Craig Venter Institute, La Jolla, California, USA.
Torrey WilliamsJ. Craig Venter Institute, La Jolla, California, USA.
Reed S ShabmanJ. Craig Venter Institute, Rockville, Maryland, USA.
Gene S TanJ. Craig Venter Institute, La Jolla, California, USA.
Angel BalmasedaLaboratorio Nacional de Virología, Centro Nacional de Diagnóstico y Referencia, Ministry of Health, Managua, Nicaragua.
Guillermina KuanCentro de Salud Sócrates Flores Vivas, Ministry of Health, Managua, Nicaragua.
Saira SaborioLaboratorio Nacional de Virología, Centro Nacional de Diagnóstico y Referencia, Ministry of Health, Managua, Nicaragua.
Aubree GordonDepartment of Epidemiology, School of Public Health, University of Michigan, Ann Arbor, Michigan, USA.
Eva HarrisDivision of Infectious Diseases and Vaccinology, School of Public Health, University of California, Berkeley, Berkeley, California, USA.
Brett E PickettJ. Craig Venter Institute, Rockville, Maryland, USA bpickett@jcvi.org.ORCID https://orcid.org/0000-0001-7930-8160

Funding

T Cell Responses Following DENV Natural Infections and Live-Attenuated Dengue Virus VaccinationP01AI106695 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI Eva Harris · 2015 to 2026
$34.1M
The J. Craig Venter Institute Genome Center for Infectious DiseasesU19AI110819 · NIAID · J. CRAIG VENTER INSTITUTE, INC. · PI TAN, GENE · 2014 to 2018
$29.7M
NIAID NIH HHS P01 AI106695NIAID NIH HHS U19 AI110819
6 · The paper itself

Abstract

We report here the whole-genome sequence of 11 Zika virus (ZIKV) samples from six pediatric patients in Nicaragua. Serum samples were collected, and ZIKV was isolated in tissue culture. Both serum and virus isolates were sequenced. The consensus ZIKV genomes are greater than 99% identical to each other.

Identifiers

PMID29903816
PMCPMC6003747

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.