Evidence map›Paper›PMID 29902209›Full record

ArticlePLoS genetics2018

An intronic enhancer of Bmp6 underlies evolved tooth gain in sticklebacks.

Phillip A Cleves, James C Hart, Rachel M Agoglia, Monica T Jimenez, Priscilla A Erickson, Linda Gai, Craig T Miller

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 37 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Threespine Stickleback: A Model System For Evolutionary Genomics.Annual review of genomics and human genetics · 2021
    Review
  13. Article
  14. Grand Challenges in Comparative Tooth Biology.Integrative and comparative biology · 2020
    Article
  15. Article
  16. Article
  17. Dissecting Trait Variation across Species Barriers.Trends in ecology & evolution · 2019
    Review
  18. Searching for Sympatric Speciation in the Genomic Era.BioEssays : news and reviews in molecular, cellular and developmental biology · 2019
    Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Phillip A ClevesDepartment of Molecular and Cell Biology, University of California-Berkeley, Berkeley CA, United States of America.
James C HartDepartment of Molecular and Cell Biology, University of California-Berkeley, Berkeley CA, United States of America.ORCID 0000-0002-6245-0459
Rachel M AgogliaDepartment of Molecular and Cell Biology, University of California-Berkeley, Berkeley CA, United States of America.
Monica T JimenezDepartment of Molecular and Cell Biology, University of California-Berkeley, Berkeley CA, United States of America.
Priscilla A EricksonDepartment of Molecular and Cell Biology, University of California-Berkeley, Berkeley CA, United States of America.ORCID 0000-0001-8420-995X
Linda GaiDepartment of Molecular and Cell Biology, University of California-Berkeley, Berkeley CA, United States of America.
Craig T MillerDepartment of Molecular and Cell Biology, University of California-Berkeley, Berkeley CA, United States of America.ORCID 0000-0002-1970-8389
University of California, Berkeley · US

Funding

GENOMICST32HG000047 · NHGRI · UNIVERSITY OF CALIFORNIA BERKELEY · PI RASMUS NIELSEN, Daniel Soleyman Rokhsar · 2000 to 2026
$13.5M
POSTGRADUATE TRAINING PROGRAM IN GENETICST32GM007127 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI DILLIN, ANDREW G · 1985 to 2016
$7.9M
Development Genetics of Tooth Number Variation in SticklebacksR01DE021475 · NIDCR · UNIVERSITY OF CALIFORNIA BERKELEY · PI MILLER, CRAIG THOMAS · 2011 to 2025
$5.4M
Genome Sequencer FLXS10RR029668 · NCRR · UNIVERSITY OF CALIFORNIA BERKELEY · PI NGAI, JOHN J. · 2010 to 2010
$623k
Illumina Sequencer to Facilitate Functional Genomics at BerkeleyS10RR027303 · NCRR · UNIVERSITY OF CALIFORNIA BERKELEY · PI TAYLOR, JOHN W. · 2010 to 2010
$500k
NCRR NIH HHS S10 RR027303NCRR NIH HHS S10 RR029668NHGRI NIH HHS T32 HG000047NIDCR NIH HHS R01 DE021475NIGMS NIH HHS T32 GM007127
6 · The paper itself

Abstract

Threespine stickleback fish offer a powerful system to dissect the genetic basis of morphological evolution in nature. Marine sticklebacks have repeatedly invaded and adapted to numerous freshwater environments throughout the Northern hemisphere. In response to new diets in freshwater habitats, changes in craniofacial morphology, including heritable increases in tooth number, have evolved in derived freshwater populations. Using a combination of quantitative genetics and genome resequencing, here we fine-mapped a quantitative trait locus (QTL) regulating evolved tooth gain to a cluster of ten QTL-associated single nucleotide variants, all within intron four of Bone Morphogenetic Protein 6 (Bmp6). Transgenic reporter assays revealed this intronic region contains a tooth enhancer. We induced mutations in Bmp6, revealing required roles for survival, growth, and tooth patterning. Transcriptional profiling of Bmp6 mutant dental tissues identified significant downregulation of a set of genes whose orthologs were previously shown to be expressed in quiescent mouse hair stem cells. Collectively these data support a model where mutations within a Bmp6 intronic tooth enhancer contribute to evolved tooth gain, and suggest that ancient shared genetic circuitry regulates the regeneration of diverse vertebrate epithelial appendages including mammalian hair and fish teeth.

Indexed as

AnimalsBiological EvolutionBone Morphogenetic Protein 6Chromosome MappingEnhancer Elements, GeneticEvolution, MolecularFresh WaterGene Expression Regulation, DevelopmentalGenetic LinkageGenotypeIntronsPhenotypePolymorphism, Single NucleotideQuantitative Trait LociSmegmamorphaToothBone Morphogenetic Protein 6

Identifiers

PMID29902209
PMCPMC6019817
OpenAlexW2808332921

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.