Evidence map›Paper›PMID 29899950›Full record

ArticleChemical science2018

Non-competitive cyclic peptides for targeting enzyme-substrate complexes.

T E McAllister, T-L Yeh, M I Abboud, I K H Leung, E S Hookway, O N F King, B Bhushan, S T Williams, R J Hopkinson, M Münzel and 8 more

Open access · diamondAbstract read
In one paragraph

Article in Chemical science, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. E3 Ligase Ligands for PROTACs: How They Were Found and How to Discover New Ones.SLAS discovery : advancing life sciences R & D · 2021
    Review
  11. Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 3 institutions in 4 countries.

T E McAllisterDepartment of Chemistry , University of Oxford , Chemistry Research Laboratory , 12 Mansfield Road , Oxford OX1 3TA , UK . Email: akane.kawamura@chem.ox.ac.uk.ORCID 0000-0001-6906-4510
T-L YehDepartment of Chemistry , University of Oxford , Chemistry Research Laboratory , 12 Mansfield Road , Oxford OX1 3TA , UK . Email: akane.kawamura@chem.ox.ac.uk.ORCID 0000-0002-6265-6262
M I AbboudDepartment of Chemistry , University of Oxford , Chemistry Research Laboratory , 12 Mansfield Road , Oxford OX1 3TA , UK . Email: akane.kawamura@chem.ox.ac.uk.ORCID 0000-0003-2141-5988
I K H LeungDepartment of Chemistry , University of Oxford , Chemistry Research Laboratory , 12 Mansfield Road , Oxford OX1 3TA , UK . Email: akane.kawamura@chem.ox.ac.uk.ORCID 0000-0003-0633-6771
E S HookwayBotnar Research Centre , NIHR Oxford Biomedical Research Unit , University of Oxford , Windmill Road , Oxford , OX3 7LD , UK.
O N F KingDepartment of Chemistry , University of Oxford , Chemistry Research Laboratory , 12 Mansfield Road , Oxford OX1 3TA , UK . Email: akane.kawamura@chem.ox.ac.uk.
B BhushanDepartment of Chemistry , University of Oxford , Chemistry Research Laboratory , 12 Mansfield Road , Oxford OX1 3TA , UK . Email: akane.kawamura@chem.ox.ac.uk.
S T WilliamsDepartment of Chemistry , University of Oxford , Chemistry Research Laboratory , 12 Mansfield Road , Oxford OX1 3TA , UK . Email: akane.kawamura@chem.ox.ac.uk.
R J HopkinsonDepartment of Chemistry , University of Oxford , Chemistry Research Laboratory , 12 Mansfield Road , Oxford OX1 3TA , UK . Email: akane.kawamura@chem.ox.ac.uk.ORCID 0000-0001-7610-8163
M MünzelDepartment of Chemistry , University of Oxford , Chemistry Research Laboratory , 12 Mansfield Road , Oxford OX1 3TA , UK . Email: akane.kawamura@chem.ox.ac.uk.
N D LoikDepartment of Chemistry , Graduate School of Science , The University of Tokyo , Tokyo 113-0033 , Japan.
R ChowdhuryDepartment of Chemistry , University of Oxford , Chemistry Research Laboratory , 12 Mansfield Road , Oxford OX1 3TA , UK . Email: akane.kawamura@chem.ox.ac.uk.
U OppermannBotnar Research Centre , NIHR Oxford Biomedical Research Unit , University of Oxford , Windmill Road , Oxford , OX3 7LD , UK.
T D W ClaridgeDepartment of Chemistry , University of Oxford , Chemistry Research Laboratory , 12 Mansfield Road , Oxford OX1 3TA , UK . Email: akane.kawamura@chem.ox.ac.uk.
Y GotoDepartment of Chemistry , Graduate School of Science , The University of Tokyo , Tokyo 113-0033 , Japan.
H SugaDepartment of Chemistry , Graduate School of Science , The University of Tokyo , Tokyo 113-0033 , Japan.ORCID 0000-0002-5298-9186
C J SchofieldDepartment of Chemistry , University of Oxford , Chemistry Research Laboratory , 12 Mansfield Road , Oxford OX1 3TA , UK . Email: akane.kawamura@chem.ox.ac.uk.ORCID 0000-0002-0290-6565
A KawamuraDepartment of Chemistry , University of Oxford , Chemistry Research Laboratory , 12 Mansfield Road , Oxford OX1 3TA , UK . Email: akane.kawamura@chem.ox.ac.uk.
Oxfam · GBThe University of Tokyo · JPUniversity of Oxford · GB

Funding

British Heart Foundation PG/12/33/29546British Heart Foundation RE/08/004/23915Versus Arthritis 20522Wellcome Trust
6 · The paper itself

Abstract

Affinity reagents are of central importance for selectively identifying proteins and investigating their interactions. We report on the development and use of cyclic peptides, identified by mRNA display-based RaPID methodology, that are selective for, and tight binders of, the human hypoxia inducible factor prolyl hydroxylases (PHDs) - enzymes crucial in hypoxia sensing. Biophysical analyses reveal the cyclic peptides to bind in a distinct site, away from the enzyme active site pocket, enabling conservation of substrate binding and catalysis. A biotinylated cyclic peptide captures not only the PHDs, but also their primary substrate hypoxia inducible factor HIF1-α. Our work highlights the potential for tight, non-active site binding cyclic peptides to act as promising affinity reagents for studying protein-protein interactions.

Identifiers

PMID29899950
PMCPMC5969509
OpenAlexW2799630004

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.