Evidence map›Paper›PMID 29899894›Full record

ArticleChemical science2016

Elucidating the fundamental forces in protein crystal formation: the case of crambin.

Massimo Delle Piane, Marta Corno, Roberto Orlando, Roberto Dovesi, Piero Ugliengo

Abstract read
In one paragraph

Article in Chemical science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. CRYSTAL23: A Program for Computational Solid State Physics and Chemistry.Journal of chemical theory and computation · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Massimo Delle PianeDepartment of Chemistry and NIS Centre , University of Torino , via Pietro Giuria 7 , 10125 , Torino , Italy . Email: piero.ugliengo@unito.it.ORCID 0000-0001-8522-9047
Marta CornoDepartment of Chemistry and NIS Centre , University of Torino , via Pietro Giuria 7 , 10125 , Torino , Italy . Email: piero.ugliengo@unito.it.ORCID 0000-0001-7248-2705
Roberto OrlandoDepartment of Chemistry and NIS Centre , University of Torino , via Pietro Giuria 7 , 10125 , Torino , Italy . Email: piero.ugliengo@unito.it.
Roberto DovesiDepartment of Chemistry and NIS Centre , University of Torino , via Pietro Giuria 7 , 10125 , Torino , Italy . Email: piero.ugliengo@unito.it.
Piero UgliengoDepartment of Chemistry and NIS Centre , University of Torino , via Pietro Giuria 7 , 10125 , Torino , Italy . Email: piero.ugliengo@unito.it.ORCID 0000-0001-8886-9832

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Molecular simulations of proteins have been usually accomplished through empirical or semi-empirical potentials, due to the large size and inherent complexity of these biological systems. On the other hand, a theoretical description of proteins based on quantum-mechanical methods would however provide an unbiased characterization of their electronic properties, possibly offering a link between these and the ultimate biological activity. Yet, such approaches have been historically hindered by the large amount of requested computational power. Here we demonstrate the feasibility of periodic all-electron density functional theory calculations in the description of the crystal of the protein crambin (46 aminoacids), which is determined with exceptional structural accuracy. We have employed the hybrid B3LYP functional, coupled to an empirical description of London interactions (D*) to simulate the crambin crystal with an increasing amount of lattice water molecules in the cell (up to 172H

Identifiers

PMID29899894
PMCPMC5963673

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