Evidence map›Paper›PMID 29899562›Full record

ArticleScientific reports2018

Immunome differences between porcine ileal and jejunal Peyer's patches revealed by global transcriptome sequencing of gut-associated lymphoid tissues.

T Maroilley, M Berri, G Lemonnier, D Esquerré, C Chevaleyre, S Mélo, F Meurens, J L Coville, J J Leplat, A Rau and 7 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.5field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 1 country.

T MaroilleyGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.ORCID 0000-0002-3392-5363
M BerriISP, INRA, Université de Tours, 37380, Nouzilly, France.
G LemonnierGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
D EsquerréGenPhySE, INRA, INPT, ENVT, Université de Toulouse, 31326, Castenet-Tolosan, France.
C ChevaleyreISP, INRA, Université de Tours, 37380, Nouzilly, France.
S MéloISP, INRA, Université de Tours, 37380, Nouzilly, France.
F MeurensISP, INRA, Université de Tours, 37380, Nouzilly, France.
J L CovilleGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
J J LeplatGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
A RauGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
B Bed'homGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
S Vincent-NaulleauGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
M J MercatBIOPORC and IFIP-Institut du porc, La Motte au Vicomte, BP 35104, 35651, Le Rheu, France.
Y BillonGENESI, INRA, 17700, Surgères, France.
P LepageMICALIS Institute, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
C Rogel-GaillardGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France. claire.rogel-gaillard@inra.fr.
J EstelléGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.ORCID 0000-0002-6241-1732
AgroParisTech · FRUniversité de Tours · FRDépartement Génétique Animale · FRÉcole Nationale Vétérinaire de Toulouse · FRInstitut du Porc · FRUniversité Paris-Saclay · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The epithelium of the intestinal mucosa and the gut-associated lymphoid tissues (GALT) constitute an essential physical and immunological barrier against pathogens. In order to study the specificities of the GALT transcriptome in pigs, we compared the transcriptome profiles of jejunal and ileal Peyer's patches (PPs), mesenteric lymph nodes (MLNs) and peripheral blood (PB) of four male piglets by RNA-Seq. We identified 1,103 differentially expressed (DE) genes between ileal PPs (IPPs) and jejunal PPs (JPPs), and six times more DE genes between PPs and MLNs. The master regulator genes FOXP3, GATA3, STAT4, TBX21 and RORC were less expressed in IPPs compared to JPPs, whereas the transcription factor BCL6 was found more expressed in IPPs. In comparison between IPPs and JPPs, our analyses revealed predominant differential expression related to the differentiation of T cells into Th1, Th2, Th17 and iTreg in JPPs. Our results were consistent with previous reports regarding a higher T/B cells ratio in JPPs compared to IPPs. We found antisense transcription for respectively 24%, 22% and 14% of the transcripts detected in MLNs, PPs and PB, and significant positive correlations between PB and GALT transcriptomes. Allele-specific expression analyses revealed both shared and tissue-specific cis-genetic control of gene expression.

Indexed as

AnimalsB-LymphocytesCell DifferentiationExome SequencingFemaleIleumJejunumLymph NodesLymphoid TissueMaleMesenteryPeyer's PatchesSwineT-LymphocytesTranscriptome

Identifiers

PMID29899562
PMCPMC5998120
OpenAlexW2807012944

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.