Evidence map›Paper›PMID 29899517›Full record

ArticleThe ISME journal2018

Involvement of Burkholderiaceae and sulfurous volatiles in disease-suppressive soils.

Víctor J Carrión, Viviane Cordovez, Olaf Tyc, Desalegn W Etalo, Irene de Bruijn, Victor C L de Jager, Marnix H Medema, Leo Eberl, Jos M Raaijmakers

Open access · bronzeAbstract read
In one paragraph

Article in The ISME journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
26.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 193 citations in OpenAlex.

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  17. The potential of Paraburkholderia species to enhance crop growth.World journal of microbiology & biotechnology · 2025
    Review
  18. Review
  19. Article
  20. Volatile Organic Compounds Produced by Co-Culture ofInternational journal of molecular sciences · 2024
    Article

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Víctor J CarriónDepartment of Microbial Ecology, The Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands.
Viviane CordovezDepartment of Microbial Ecology, The Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands.
Olaf TycDepartment of Microbial Ecology, The Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands.ORCID http://orcid.org/0000-0001-9949-0975
Desalegn W EtaloDepartment of Microbial Ecology, The Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands.
Irene de BruijnDepartment of Microbial Ecology, The Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands.
Victor C L de JagerDepartment of Microbial Ecology, The Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands.
Marnix H MedemaBioinformatics Group, Wageningen University, Wageningen, The Netherlands.
Leo EberlInstitute of Plant and Microbial Biology, University of Zurich, Zurich, Switzerland.ORCID http://orcid.org/0000-0002-7241-0864
Jos M RaaijmakersDepartment of Microbial Ecology, The Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands. j.raaijmakers@nioo.knaw.nl.
Netherlands Institute of Ecology · NLLeiden University · NLUniversity of Zurich · CHWageningen University & Research · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Disease-suppressive soils are ecosystems in which plants suffer less from root infections due to the activities of specific microbial consortia. The characteristics of soils suppressive to specific fungal root pathogens are comparable to those of adaptive immunity in animals, as reported by Raaijmakers and Mazzola (Science 352:1392-3, 2016), but the mechanisms and microbial species involved in the soil suppressiveness are largely unknown. Previous taxonomic and metatranscriptome analyses of a soil suppressive to the fungal root pathogen Rhizoctonia solani revealed that members of the Burkholderiaceae family were more abundant and more active in suppressive than in non-suppressive soils. Here, isolation, phylogeny, and soil bioassays revealed a significant disease-suppressive activity for representative isolates of Burkholderia pyrrocinia, Paraburkholderia caledonica, P. graminis, P. hospita, and P. terricola. In vitro antifungal activity was only observed for P. graminis. Comparative genomics and metabolite profiling further showed that the antifungal activity of P. graminis PHS1 was associated with the production of sulfurous volatile compounds encoded by genes not found in the other four genera. Site-directed mutagenesis of two of these genes, encoding a dimethyl sulfoxide reductase and a cysteine desulfurase, resulted in a loss of antifungal activity both in vitro and in situ. These results indicate that specific members of the Burkholderiaceae family contribute to soil suppressiveness via the production of sulfurous volatile compounds.

Indexed as

Soil MicrobiologyAntibiosisBurkholderiaceaeCarbon-Sulfur LyasesEcosystemFungiIron-Sulfur ProteinsMicrobial ConsortiaOxidoreductasesPhylogenyPlant DiseasesSoilSulfurCarbon-Sulfur Lyasescysteine desulfurasedimethyl sulfoxide reductaseIron-Sulfur ProteinsOxidoreductasesSoilSulfur

Identifiers

PMID29899517
PMCPMC6092406
OpenAlexW2796479622

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.