Evidence map›Paper›PMID 29899447›Full record

ArticleNature2018

Structural basis of mitochondrial receptor binding and constriction by DRP1.

Raghav Kalia, Ray Yu-Ruei Wang, Ali Yusuf, Paul V Thomas, David A Agard, Janet M Shaw, Adam Frost

Abstract read
In one paragraph

Article in Nature, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 231 papers.

0numbers the graph read from it
0cells of the map it votes in
231citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

231 citing papers in PubMed.

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171 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Raghav KaliaDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA.
Ray Yu-Ruei WangDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA.
Ali YusufDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA.
Paul V ThomasDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA.
David A AgardDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA.
Janet M ShawDepartment of Biochemistry, University of Utah, Salt Lake City, UT, USA.
Adam FrostDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA. adam.frost@ucsf.edu.

Funding

STRUCTURAL BIOLOGY TRAINING PROGRAMT32GM008284 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KORTEMME, TANJA · 1988 to 2022
$10.1M
REGULATION OF MITOCHONDRIAL INHERITANCE IN YEASTR01GM053466 · NIGMS · UNIVERSITY OF UTAH · PI SHAW, JANET M. · 1996 to 2013
$4.6M
Structure & Mechanism: microtubule nucleation, centrosomes, phage cytoskeletonR35GM118099 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AGARD, DAVID A. · 2016 to 2022
$3.6M
Mechanisms of Mitochondrial DistributionR01GM084970 · NIGMS · UNIVERSITY OF UTAH · PI SHAW, JANET M. · 2008 to 2017
$2.8M
Toward Atomic Resolution of Membranes and Membrane-Associated MachinesDP2GM110772 · NIGMS · UNIVERSITY OF UTAH · PI FROST, ADAM · 2013 to 2013
$2.2M
Acquisition of an electron microscope for high-resolution single particle cryo-EMS10OD021741 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHENG, YIFAN · 2016 to 2016
$2.0M
Regulated Mitochondrial MorphologyR01GM127673 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BULKLEY, DAVID · 2018 to 2021
$1.2M
Linux cluster for near atomic resolution single particle cryo-EMS10OD020054 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHENG, YIFAN · 2015 to 2015
$456k
High Performance Computer for Computational BiosciencesS10OD021596 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SALI, ANDREJ · 2016 to 2016
$443k
Howard Hughes Medical InstituteNIGMS NIH HHS DP2 GM110772NIGMS NIH HHS R01 GM053466NIGMS NIH HHS R01 GM084970NIGMS NIH HHS R01 GM127673NIGMS NIH HHS R35 GM118099NIGMS NIH HHS T32 GM008284NIH HHS S10 OD020054NIH HHS S10 OD021596NIH HHS S10 OD021741
6 · The paper itself

Abstract

Mitochondrial inheritance, genome maintenance and metabolic adaptation depend on organelle fission by dynamin-related protein 1 (DRP1) and its mitochondrial receptors. DRP1 receptors include the paralogues mitochondrial dynamics proteins of 49 and 51 kDa (MID49 and MID51) and mitochondrial fission factor (MFF); however, the mechanisms by which these proteins recruit and regulate DRP1 are unknown. Here we present a cryo-electron microscopy structure of full-length human DRP1 co-assembled with MID49 and an analysis of structure- and disease-based mutations. We report that GTP induces a marked elongation and rotation of the GTPase domain, bundle-signalling element and connecting hinge loops of DRP1. In this conformation, a network of multivalent interactions promotes the polymerization of a linear DRP1 filament with MID49 or MID51. After co-assembly, GTP hydrolysis and exchange lead to MID receptor dissociation, filament shortening and curling of DRP1 oligomers into constricted and closed rings. Together, these views of full-length, receptor- and nucleotide-bound conformations reveal how DRP1 performs mechanical work through nucleotide-driven allostery.

Indexed as

Allosteric RegulationBinding SitesCryoelectron MicroscopyDeath-Associated Protein KinasesGTP PhosphohydrolasesGuanosine TriphosphateHumansHydrolysisMitochondrial ProteinsModels, MolecularMutationPeptide Elongation FactorsPhosphorylationProtein DomainsRotationStructure-Activity RelationshipDeath-Associated Protein KinasesGTP PhosphohydrolasesGuanosine TriphosphateMIEF1 protein, humanMIEF2 protein, humanMitochondrial ProteinsPeptide Elongation Factors

Identifiers

PMID29899447
PMCPMC6120343

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.