Evidence map›Paper›PMID 29899363›Full record

ArticleScientific reports2018

Metabolic Phenotyping of Anks3 Depletion in mIMCD-3 cells - a Putative Nephronophthisis Candidate.

Manuel Schlimpert, Simon Lagies, Vadym Budnyk, Barbara Müller, Gerd Walz, Bernd Kammerer

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Metabolic perturbations caused by depletion of nephronophthisis factor Anks6 in mIMCD3 cells.Metabolomics : Official journal of the Metabolomic Society · 2019
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Manuel SchlimpertCenter for Biological Systems Analysis, Albert-Ludwigs-University of Freiburg, Freiburg, Germany.
Simon LagiesCenter for Biological Systems Analysis, Albert-Ludwigs-University of Freiburg, Freiburg, Germany.
Vadym BudnykDepartment of Medicine, Renal Division, Albert-Ludwigs-University of Freiburg, Medical Center, Freiburg, Germany.ORCID 0000-0003-1131-4163
Barbara MüllerDepartment of Medicine, Renal Division, Albert-Ludwigs-University of Freiburg, Medical Center, Freiburg, Germany.
Gerd WalzDepartment of Medicine, Renal Division, Albert-Ludwigs-University of Freiburg, Medical Center, Freiburg, Germany.
Bernd KammererCenter for Biological Systems Analysis, Albert-Ludwigs-University of Freiburg, Freiburg, Germany. bernd.kammerer@zbsa.uni-freiburg.de.
University of Freiburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nephronophthisis (NPH) is an autosomal recessive form of cystic kidney disease and the leading cause of hereditary kidney failure in children and young adults. Like other NPH proteins, the NPHP16/Anks6-interacting protein Anks3 has been identified to cause laterality defects in humans. However, the cellular functions of Anks3 remain enigmatic. We investigated the metabolic impact of Anks3 depletion in cultured murine inner medullary collecting duct cells via GC-MS profiling and LC-MS/MS analysis. Combined metabolomics successfully identified 155 metabolites; 48 metabolites were identified to be significantly altered by decreasing Anks3 levels. Especially, amino acid and purine/pyrimidine metabolism were affected by loss of Anks3. Branched-chain amino acids were identified to be significantly downregulated suggesting disrupted nutrient signalling. Tryptophan and 1-ribosyl-imidazolenicotinamide accumulated whereas NAD

Indexed as

AnimalsCarrier ProteinsCells, CulturedChromatography, LiquidDisease Models, AnimalGas Chromatography-Mass SpectrometryHumansKidney Diseases, CysticKidney MedullaKidney Tubules, CollectingMetabolomicsMiceRNA InterferenceTandem Mass SpectrometryAnks3 protein, mouseCarrier Proteins

Identifiers

PMID29899363
PMCPMC5998149
OpenAlexW2805891476

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.