Evidence map›Paper›PMID 29899319›Full record

ArticleInternational journal of molecular sciences2018

RNA-Seq Analysis Reveals a Positive Role of HTR2A in Adipogenesis in Yan Yellow Cattle.

Jinyan Yun, Haiguo Jin, Yang Cao, Lichun Zhang, Yumin Zhao, Xin Jin, Yongsheng Yu

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Serotonin 5-HTScientific reports · 2021
    Article
  8. Interference WithFrontiers in veterinary science · 2021
    Article
  9. Article
  10. Effect of theFrontiers in genetics · 2021
    Article
  11. Article
  12. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jinyan YunBranch of Animal Husbandry, Jilin Academy of Agricultural Sciences, 186 Dongxinghua Road, Gongzhuling 136100, China. yunjinyan@hotmail.com.
Haiguo JinBranch of Animal Husbandry, Jilin Academy of Agricultural Sciences, 186 Dongxinghua Road, Gongzhuling 136100, China. Khk1962@126.com.
Yang CaoBranch of Animal Husbandry, Jilin Academy of Agricultural Sciences, 186 Dongxinghua Road, Gongzhuling 136100, China. caoyang003@163.com.
Lichun ZhangBranch of Animal Husbandry, Jilin Academy of Agricultural Sciences, 186 Dongxinghua Road, Gongzhuling 136100, China. zhang_lich@163.com.
Yumin ZhaoBranch of Animal Husbandry, Jilin Academy of Agricultural Sciences, 186 Dongxinghua Road, Gongzhuling 136100, China. zhaoym-02-12@vip.163.com.
Xin JinAgriculture College of Yanbian University, 977 Gongyuan Road, Yanji 133002, China. jinxin@ybu.edu.cn.
Yongsheng YuBranch of Animal Husbandry, Jilin Academy of Agricultural Sciences, 186 Dongxinghua Road, Gongzhuling 136100, China. yuys2002@cjaas.com.ORCID 0000-0001-7207-0516
Jilin Academy of Agricultural Sciences · CNYanbian University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study, we performed high throughput RNA sequencing at the primary bovine preadipocyte (Day-0), mid-differentiation (Day-4), and differentiated adipocyte (Day-9) stages in order to characterize the transcriptional events regulating differentiation and function. The preadipocytes were isolated from subcutaneous fetal bovine adipose tissues and were differentiated into mature adipocytes. The adipogenic characteristics of the adipocytes were detected during various stages of adipogenesis (Day-0, Day-4, and Day-9). We used RNA sequencing (RNA-seq) to investigate a comprehensive transcriptome information of adipocytic differentiation. Compared to the pre-differentiation stage (Day-0), 2510 genes were identified as differentially expressed genes (DEGs) at the mid-differentiation stage (Day-4). We found 2446 DEGs in the mature adipocytic stage relative to the mid-differentiation stage. Some adipogenesis-related transcription factors, CCAAT-enhancer-binding protein α (C/EBPα) and peroxisome proliferator-activated receptor γ (PPARγ) were differentially expressed at Day-0, Day-4, and Day-9. We further investigated the adipogenic function of 5-hydroxytryptamine receptor 2A (HTR2A) in adipogenesis. Overexpression of HTR2A stimulated the differentiation of preadipocytes, and knockdown of HTR2A had opposite effects. Furthermore, functional enrichment analysis of DEGs revealed that the PI3K-Akt signaling pathway was the significantly enriched pathway, and HTR2A regulated adipogenesis by activating or inhibiting phosphorylation of phospho-AKT (Ser473). In summary, the present study provides the first comparative transcription of various periods of adipocytes in cattle, which presents a solid foundation for further study into the molecular mechanism of fat deposition and the improvement of beef quality in cattle.

Indexed as

AdipogenesisTranscriptomeAdipocytesAnimalsCattleCCAAT-Enhancer-Binding ProteinsCells, CulturedPhosphatidylinositol 3-KinasesPPAR gammaProto-Oncogene Proteins c-aktReceptor, Serotonin, 5-HT2ATranscription FactorsCCAAT-Enhancer-Binding ProteinsPhosphatidylinositol 3-KinasesPPAR gammaProto-Oncogene Proteins c-aktReceptor, Serotonin, 5-HT2ATranscription FactorsadipogenesisDEGsHTR2API3K/Akt signaling pathwayRNA-Seq

Identifiers

PMID29899319
PMCPMC6032390
OpenAlexW2807858569

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.