Evidence map›Paper›PMID 29899097›Full record

ArticleJournal of virology2018

Multiple Host Factors Interact with the Hypervariable Domain of Chikungunya Virus nsP3 and Determine Viral Replication in Cell-Specific Mode.

Chetan D Meshram, Peter Agback, Nikita Shiliaev, Nadya Urakova, James A Mobley, Tatiana Agback, Elena I Frolova, Ilya Frolov

Abstract read
In one paragraph

Article in Journal of virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 77 citations in OpenAlex.

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  16. Safety concern of recombination between self-amplifying mRNA vaccines and viruses is mitigated in vivo.Molecular therapy : the journal of the American Society of Gene Therapy · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Chetan D Meshram *Department of Microbiology, University of Alabama at Birmingham, Birmingham, Alabama, USA.
Peter Agback *Department of Molecular Sciences, Swedish University of Agricultural Sciences, Uppsala, Sweden.
Nikita ShiliaevDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, Alabama, USA.
Nadya UrakovaDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, Alabama, USA.
James A MobleyComprehensive Cancer Center, University of Alabama at Birmingham, Birmingham, Alabama, USA.
Tatiana AgbackA&A Structure & Dynamics AB, Uppsala, Sweden.
Elena I FrolovaDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, Alabama, USA.ORCID 0000-0001-6523-9336
Ilya FrolovDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, Alabama, USA ivfrolov@uab.edu.ORCID 0000-0002-8548-2517
University of Alabama at Birmingham · USSwedish University of Agricultural Sciences · SE

Funding

Revolutionary Eilat-based Chikungunya Vaccine VectorR01AI127744 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI WANG, TIAN · 2017 to 2021
$3.5M
Mechanistic role of ns2 protein in evasion of innate immune response by alphavirusesR01AI133159 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI FROLOVA, ELENA I · 2017 to 2021
$3.0M
Alphavirus nsP3 protein: roles of intrinsically disordered region in virus replication and pathogenesisR01AI118867 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI FROLOVA, ELENA I · 2015 to 2019
$1.8M
Mechanism of alphavirus packaging: designing of pseudoinfectious virusesR01AI095449 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI FROLOV, ILYA V. · 2012 to 2016
$1.8M
Single round infection chikungunya virus as a new vaccine candidateR21AI119627 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI FROLOV, ILYA V. · 2016 to 2017
$404k
NIAID NIH HHS R01 AI095449NIAID NIH HHS R01 AI118867NIAID NIH HHS R01 AI127744NIAID NIH HHS R01 AI133159NIAID NIH HHS R21 AI119627
6 · The paper itself

Abstract

Alphaviruses are widely distributed in both hemispheres and circulate between mosquitoes and amplifying vertebrate hosts. Geographically separated alphaviruses have adapted to replication in particular organisms. The accumulating data suggest that this adaptation is determined not only by changes in their glycoproteins but also by the amino acid sequence of the hypervariable domain (HVD) of the alphavirus nsP3 protein. We performed a detailed investigation of chikungunya virus (CHIKV) nsP3 HVD interactions with host factors and their roles in viral replication in vertebrate and mosquito cells. The results demonstrate that CHIKV HVD is intrinsically disordered and binds several distinctive cellular proteins. These host factors include two members of the G3BP family and their mosquito homolog Rin, two members of the NAP1 family, and several SH3 domain-containing proteins. Interaction with G3BP proteins or Rin is an absolute requirement for CHIKV replication, although it is insufficient to solely drive it in either vertebrate or mosquito cells. To achieve a detectable level of virus replication, HVD needs to bind members of at least one more protein family in addition to G3BPs. Interaction with NAP1L1 and NAP1L4 plays a more proviral role in vertebrate cells, while binding of SH3 domain-containing proteins to a proline-rich fragment of HVD is more critical for virus replication in the cells of mosquito origin. Modifications of binding sites in CHIKV HVD allow manipulation of the cell specificity of CHIKV replication. Similar changes may be introduced into HVDs of other alphaviruses to alter their replication in particular cells or tissues.

Indexed as

AnimalsBinding SitesCell LineChikungunya virusChlorocebus aethiopsCulicidaeHEK293 CellsHumansMiceNIH 3T3 CellsNucleosome Assembly Protein 1Protein DomainsRNA Recognition Motif ProteinsVero CellsViral Nonstructural ProteinsVirus Replicationnsp3 protein, alphavirusNucleosome Assembly Protein 1RNA Recognition Motif ProteinsViral Nonstructural ProteinsalphavirusBIN1CD2APchikungunya virusEilat virusG3BP1G3BP2NAP1L1viral RNA replicationvirus-host interactions

Identifiers

PMID29899097
PMCPMC6069204
OpenAlexW2808132849

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.