Evidence map›Paper›PMID 29898767›Full record

ArticleBMC research notes2018

Evaluation of buccal swabs for pharmacogenetics.

J Sidney Ang, Martin N Aloise, Diana Dawes, Maryn G Dempster, Robert Fraser, Andrea Paterson, Paul Stanley, Adriana Suarez-Gonzalez, Martin Dawes, Hagit Katzov-Eckert

Open access · goldAbstract read
In one paragraph

Article in BMC research notes, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

J Sidney AngGenXys Health Care Systems Inc., Vancouver, BC, Canada.
Martin N AloiseGenXys Health Care Systems Inc., Vancouver, BC, Canada.
Diana DawesGenXys Health Care Systems Inc., Vancouver, BC, Canada.
Maryn G DempsterGenXys Health Care Systems Inc., Vancouver, BC, Canada.
Robert FraserMolecular You Inc., Vancouver, BC, Canada.
Andrea PatersonGenXys Health Care Systems Inc., Vancouver, BC, Canada.
Paul StanleyGenXys Health Care Systems Inc., Vancouver, BC, Canada.
Adriana Suarez-GonzalezGenXys Health Care Systems Inc., Vancouver, BC, Canada.
Martin DawesGenXys Health Care Systems Inc., Vancouver, BC, Canada.
Hagit Katzov-EckertGenXys Health Care Systems Inc., Vancouver, BC, Canada. hagit.ke@genxys.com.ORCID http://orcid.org/0000-0001-7705-2800
University of British Columbia · CAAXYS Technologies (Canada) · CACollege of Pharmacists of British Columbia · CASpinal Cord Injury BC · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveA simple, non-invasive sample collection method is key for the integration of pharmacogenetics into clinical practice. The aim of this study was to gain samples for pharmacogenetic testing and evaluate the variation between dry-flocked and sponge-tipped buccal swabs in yield and quality of DNA isolated.

resultsThirty-one participants collected samples using dry-flocked swabs and sponge-tipped swabs. Samples were assessed for DNA yield, quality and genotyping performance on a qPCR OpenArray platform of 28 pharmacogenetic SNPs and a CYP2D6 TaqMan copy number variant. DNA from sponge-tipped swabs had a significantly greater yield compared to DNA collected with dry-flocked swabs (p = 4.4 × 10

Indexed as

Mouth MucosaAdultDNA Copy Number VariationsGenotyping TechniquesHumansPharmacogeneticsPolymorphism, Single NucleotideReal-Time Polymerase Chain ReactionSpecimen HandlingBuccal swabsCopy number variationOpenArrayPharmacogeneticsSample collection

Identifiers

PMID29898767
PMCPMC6000964
OpenAlexW2808278652

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.