Evidence map›Paper›PMID 29897930›Full record

ArticlePloS one2018

Loss of Fnip1 alters kidney developmental transcriptional program and synergizes with TSC1 loss to promote mTORC1 activation and renal cyst formation.

Ryan Centini, Mark Tsang, Terri Iwata, Heon Park, Jeffrey Delrow, Daciana Margineantu, Brandon M Iritani, Haiwei Gu, H Denny Liggitt, Janella Kang and 4 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 29 citations in OpenAlex.

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  20. The mTOR Independent Function of Tsc1 and FNIPs.Trends in biochemical sciences · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Ryan CentiniThe Department of Comparative Medicine, University of Washington, Seattle, Washington, United States of America.
Mark TsangThe Department of Comparative Medicine, University of Washington, Seattle, Washington, United States of America.
Terri IwataThe Department of Comparative Medicine, University of Washington, Seattle, Washington, United States of America.
Heon ParkThe Department of Comparative Medicine, University of Washington, Seattle, Washington, United States of America.
Jeffrey DelrowGenomics and Bioinformatics Shared Resources, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.
Daciana MargineantuClinical Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.
Brandon M IritaniThe Department of Comparative Medicine, University of Washington, Seattle, Washington, United States of America.
Haiwei GuDepartment of Anesthesiology and Pain Medicine, Mitochondria and Metabolism Center, Northwest Metabolomics Research Center, University of Washington, Seattle, Washington, United States of America.
H Denny LiggittThe Department of Comparative Medicine, University of Washington, Seattle, Washington, United States of America.
Janella KangThe Department of Comparative Medicine, University of Washington, Seattle, Washington, United States of America.
Lim KangThe Department of Comparative Medicine, University of Washington, Seattle, Washington, United States of America.
David M HockenberyClinical Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.
Daniel RafteryDepartment of Anesthesiology and Pain Medicine, Mitochondria and Metabolism Center, Northwest Metabolomics Research Center, University of Washington, Seattle, Washington, United States of America.
Brian M IritaniThe Department of Comparative Medicine, University of Washington, Seattle, Washington, United States of America.ORCID 0000-0003-1903-7850
University of Washington · USFred Hutch Cancer Center · US

Funding

Targeting Fnip1 to disrupt B cell development, metabolism, and transformationR01AI114556 · NIAID · UNIVERSITY OF WASHINGTON · PI IRITANI, BRIAN M · 2015 to 2019
$2.0M
Laboratory Animal Medicine and Translational Research Training for VeterinariansR25OD010450 · OD · UNIVERSITY OF WASHINGTON · PI BRABB, THEA, IRITANI, BRIAN M · 2012 to 2015
$634k
mTOR signaling in B cell development, function, and metabolismK01OD021421 · OD · UNIVERSITY OF WASHINGTON · PI IWATA, TERRI · 2016 to 2019
$484k
Folliculin Interacting Proteins in Lymphocyte Development and AutoimmunityR21AI109020 · NIAID · UNIVERSITY OF WASHINGTON · PI IRITANI, BRIAN M · 2014 to 2015
$425k
Fnip1 Function in Lymphocyte Development, Activation and MetabolismR56AI092093 · NIAID · UNIVERSITY OF WASHINGTON · PI IRITANI, BRIAN M · 2013 to 2013
$353k
NIAID NIH HHS R01 AI114556NIAID NIH HHS R21 AI109020NIAID NIH HHS R56 AI092093NIH HHS K01 OD021421NIH HHS R25 OD010450
6 · The paper itself

Abstract

Birt-Hogg-Dube' Syndrome (BHDS) is a rare genetic disorder in humans characterized by skin hamartomas, lung cysts, pneumothorax, and increased risk of renal tumors. BHDS is caused by mutations in the BHD gene, which encodes for Folliculin, a cytoplasmic adapter protein that binds to Folliculin interacting proteins-1 and -2 (Fnip1, Fnip2) as well as the master energy sensor AMP kinase (AMPK). Whereas kidney-specific deletion of the Bhd gene in mice is known to result in polycystic kidney disease (PKD) and renal cell carcinoma, the roles of Fnip1 in renal cell development and function are unclear. In this study, we utilized mice with constitutive deletion of the Fnip1 gene to show that the loss of Fnip1 is sufficient to result in renal cyst formation, which was characterized by decreased AMPK activation, increased mTOR activation, and metabolic hyperactivation. Using RNAseq, we found that Fnip1 disruption resulted in many cellular and molecular changes previously implicated in the development of PKD in humans, including alterations in the expression of ion and amino acid transporters, increased cell adhesion, and increased inflammation. Loss of Fnip1 synergized with Tsc1 loss to hyperactivate mTOR, increase Erk activation, and greatly accelerate the development of PKD. Our results collectively define roles for Fnip1 in regulating kidney development and function, and provide a model for how loss of Fnip1 contributes to PKD and perhaps renal cell carcinoma.

Indexed as

Gene DeletionAnimalsCarrier ProteinsCystsEnzyme ActivationEpithelial CellsGene Expression ProfilingGenotypeKidneyMechanistic Target of Rapamycin Complex 1MiceOrgan SizeOxidative PhosphorylationTranscription, GeneticTuberous Sclerosis Complex 1 ProteinCarrier ProteinsFNIP1 protein, mouseMechanistic Target of Rapamycin Complex 1Tsc1 protein, mouseTuberous Sclerosis Complex 1 Protein

Identifiers

PMID29897930
PMCPMC5999084
OpenAlexW2807784135

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.