Evidence map›Paper›PMID 29897749›Full record

ArticleJournal of the American Chemical Society2018

Inhibition Mechanisms of Human Indoleamine 2,3 Dioxygenase 1.

Ariel Lewis-Ballester, Shay Karkashon, Dipanwita Batabyal, Thomas L Poulos, Syun-Ru Yeh

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Heme-based dioxygenases: Structure, function and dynamics.Journal of inorganic biochemistry · 2024
    Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Conformational Plasticity in Human Heme-Based Dioxygenases.Journal of the American Chemical Society · 2021
    Article
  12. Article
  13. Positive allosteric modulation of indoleamine 2,3-dioxygenase 1 restrains neuroinflammation.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Ariel Lewis-BallesterDepartment of Physiology and Biophysics , Albert Einstein College of Medicine , Bronx , New York 10461 , United States.
Shay KarkashonDepartment of Physiology and Biophysics , Albert Einstein College of Medicine , Bronx , New York 10461 , United States.
Dipanwita Batabyal
Syun-Ru YehDepartment of Physiology and Biophysics , Albert Einstein College of Medicine , Bronx , New York 10461 , United States.ORCID 0000-0002-9858-386X
Albert Einstein College of Medicine · USUniversity of California, Irvine · US

Funding

STRUCTURAL STUDIES ON NITRIC OXIDE SYNTHASER01GM057353 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI POULOS, THOMAS L · 1998 to 2018
$6.8M
Structure and Function of Heme-based DioxygenasesR01GM115773 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI YEH, SYUN-RU · 2016 to 2023
$3.3M
Structures of time-resolved intermediates in cytochrome c oxidase obtained by serial femtosecond crystallographyR01GM126297 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI DENIS L. ROUSSEAU · 2017 to 2026
$3.2M
NIGMS NIH HHS R01 GM057353NIGMS NIH HHS R01 GM115773NIGMS NIH HHS R01 GM126297
6 · The paper itself

Abstract

Human indoleamine 2,3-dioxygenase 1 (hIDO1) and tryptophan dioxygenase (hTDO) catalyze the same dioxygenation reaction of Trp to generate N-formyl kynurenine (NFK). They share high structural similarity, especially in the active site. However, hIDO1 possesses a unique inhibitory substrate binding site (Si) that is absent in hTDO. In addition, in hIDO1, the indoleamine group of the substrate Trp is H-bonded to S167 through a bridging water, while that in hTDO is directly H-bonded to H76. Here we show that Trp binding to the Si site or the mutation of S167 to histidine in hIDO1 retards its turnover activity and that the inhibited activity can be rescued by an effector, 3-indole ethanol (IDE). Kinetic studies reveal that the inhibited activity introduced by Trp binding to the Si site is a result of retarded recombination of the ferryl moiety with Trp epoxide to form NFK and that IDE reverses the effect by preventing Trp from binding to the Si site. In contrast, the abolished activity induced by the S167H mutation is primarily a result of ∼5000-fold reduction in the O

Indexed as

Binding SitesCatalytic DomainHumansIndoleamine-Pyrrole 2,3,-DioxygenaseKineticsKynurenineModels, MolecularProtein BindingSubstrate SpecificityTryptophanTryptophan OxygenaseIDO1 protein, humanIndoleamine-Pyrrole 2,3,-DioxygenaseKynurenineN'-formylkynurenineTryptophanTryptophan Oxygenase

Identifiers

PMID29897749
PMCPMC6434940
OpenAlexW2808177929

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.