Evidence map›Paper›PMID 29895903›Full record

ArticleBlood cancer journal2018

Integrated DNA/RNA targeted genomic profiling of diffuse large B-cell lymphoma using a clinical assay.

Andrew M Intlekofer, Erel Joffe, Connie L Batlevi, Patrick Hilden, Jie He, Venkatraman E Seshan, Andrew D Zelenetz, M Lia Palomba, Craig H Moskowitz, Carol Portlock and 21 more

Open access · goldAbstract read
In one paragraph

Article in Blood cancer journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. RHOA controls oncogenic B cell receptor signaling in aggressive lymphoma.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Impact ofFrontiers in immunology · 2026
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  15. Article
  16. Influence ofCancers · 2021
    Article
  17. Article
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors at 2 institutions in 1 country.

Andrew M IntlekoferLymphoma Service, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID http://orcid.org/0000-0001-9046-6549
Erel JoffeLymphoma Service, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID http://orcid.org/0000-0002-7883-289X
Connie L BatleviLymphoma Service, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Patrick HildenDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID http://orcid.org/0000-0003-4523-7995
Jie HeFoundation Medicine Inc., Cambridge, MA, USA.
Venkatraman E SeshanDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Andrew D ZelenetzLymphoma Service, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
M Lia PalombaLymphoma Service, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Craig H MoskowitzLymphoma Service, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Carol PortlockLymphoma Service, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
David J StrausLymphoma Service, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Ariela NoyLymphoma Service, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Steven M HorwitzLymphoma Service, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
John F GerecitanoLymphoma Service, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Alison MoskowitzLymphoma Service, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Paul HamlinLymphoma Service, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Matthew J MatasarLymphoma Service, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Anita KumarLymphoma Service, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Marcel R van den BrinkDivision of Hematologic Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Kristina M KnappHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Janine D PichardoDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Michelle K NahasFoundation Medicine Inc., Cambridge, MA, USA.
Sally E TrabuccoFoundation Medicine Inc., Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-8836-1542
Tariq MughalFoundation Medicine Inc., Cambridge, MA, USA.
Amanda R CopelandLymphoma Service, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Elli PapaemmanuilCenter for Hematologic Malignancies, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Mathai MoariiCenter for Hematologic Malignancies, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Ross L LevineDepartment of Medicine, Weill Cornell Medical College, New York, NY, USA.
Ahmet DoganDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Vincent A MillerFoundation Medicine Inc., Cambridge, MA, USA.
Anas YounesLymphoma Service, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA. younesa@mskcc.org.
Memorial Sloan Kettering Cancer Center · USFoundation Medicine (United States)

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Translating Stress Response Targeted Therapy for B-Cell LymphomasP50CA192937 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI ZELENETZ, ANDREW D. · 2016 to 2020
$10.9M
Investigating L-2-hydroxyglutarate in normal hematopoiesis and leukemogenesisK08CA201483 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI INTLEKOFER, ANDREW MICHAEL · 2016 to 2020
$887k
NCI NIH HHS K08 CA201483NCI NIH HHS P30 CA008748NCI NIH HHS P50 CA192937
6 · The paper itself

Abstract

We sought to define the genomic landscape of diffuse large B-cell lymphoma (DLBCL) by using formalin-fixed paraffin-embedded (FFPE) biopsy specimens. We used targeted sequencing of genes altered in hematologic malignancies, including DNA coding sequence for 405 genes, noncoding sequence for 31 genes, and RNA coding sequence for 265 genes (FoundationOne-Heme). Short variants, rearrangements, and copy number alterations were determined. We studied 198 samples (114 de novo, 58 previously treated, and 26 large-cell transformation from follicular lymphoma). Median number of GAs per case was 6, with 97% of patients harboring at least one alteration. Recurrent GAs were detected in genes with established roles in DLBCL pathogenesis (e.g. MYD88, CREBBP, CD79B, EZH2), as well as notable differences compared to prior studies such as inactivating mutations in TET2 (5%). Less common GAs identified potential targets for approved or investigational therapies, including BRAF, CD274 (PD-L1), IDH2, and JAK1/2. TP53 mutations were more frequently observed in relapsed/refractory DLBCL, and predicted for lack of response to first-line chemotherapy, identifying a subset of patients that could be prioritized for novel therapies. Overall, 90% (n = 169) of the patients harbored a GA which could be explored for therapeutic intervention, with 54% (n = 107) harboring more than one putative target.

Indexed as

Biomarkers, TumorGene Expression ProfilingGenomicsAgedAged, 80 and overAntineoplastic Combined Chemotherapy ProtocolsBiopsyComputational BiologyDNA Copy Number VariationsFemaleHigh-Throughput Nucleotide SequencingHumansLymphoma, Large B-Cell, DiffuseMaleMiddle AgedMolecular Sequence AnnotationBiomarkers, Tumor

Identifiers

PMID29895903
PMCPMC5997645
OpenAlexW2808005169

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.