Evidence map›Paper›PMID 29894500›Full record

ArticlePloS one2018

Role of the tomato TAGL1 gene in regulating fruit metabolites elucidated using RNA sequence and metabolomics analyses.

Xiaodan Zhao, Xinyu Yuan, Sha Chen, Lanhuan Meng, Daqi Fu

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
5.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
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  12. Tomato Fruit Development and Metabolism.Frontiers in plant science · 2019
    Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Xiaodan ZhaoSchool of Food and Chemical Engineering, Beijing Technology and Business University, Haidian District, Beijing, China.
Xinyu YuanLaboratory of Food Biotechnology, College of Food Science and Nutritional Engineering, China Agricultural University, Haidian District, Beijing, China.
Sha ChenInstitute of Traditional Chinese Medicine, China Academy of Chinese Medical Sciences, Beijing, China.
Lanhuan MengLaboratory of Food Biotechnology, College of Food Science and Nutritional Engineering, China Agricultural University, Haidian District, Beijing, China.
Daqi FuLaboratory of Food Biotechnology, College of Food Science and Nutritional Engineering, China Agricultural University, Haidian District, Beijing, China.ORCID 0000-0002-5016-7461
China Agricultural University · CNBeijing Technology and Business University · CNChinese Academy of Medical Sciences & Peking Union Medical College · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fruit ripening is a complex biological process affecting fruit quality. In tomato the fruit ripening process is delicately regulated by transcription factors (TFs). Among these, the TOMATO AGAMOUS-LIKE 1 (TAGL1) gene plays an important role in both the development and ripening of fruit. In this study, the TAGL1 gene was successfully silenced by virus-induced gene silencing technology (VIGS), and the global gene expression and metabolites profiles of TAGL1-silenced fruits were analyzed by RNA-sequence analysis (RNA-seq) and liquid chromatography-mass spectrometry (LC-MS/MS). The TAGL1-silenced fruits phenotypically displayed an orange pericarp, which was in accordance with the results expected from the down-regulation of genes associated with carotenoid synthesis. Levels of several amino acids and organic acids were lower in the TAGL1-silenced fruits than in the wild-type fruits, whereas, α-tomatine content was greatly increased (more than 10-fold) in the TAGL1-silenced fruits compared to wild-type fruits. The findings of this study showed that TAGL1 not only regulates the ripening of tomato fruits, but also affects the synthesis and levels of nutrients in the fruit.

Indexed as

MetabolomicsTranscriptomeFruitGene SilencingHigh-Throughput Nucleotide SequencingMADS Domain ProteinsPlant ProteinsSolanum lycopersicumMADS Domain ProteinsPlant Proteins

Identifiers

PMID29894500
PMCPMC5997326
OpenAlexW2808556529

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.