Evidence map›Paper›PMID 29893665›Full record

ArticleThe Journal of general virology2018

The ADRP domain from a virulent strain of infectious bronchitis virus is not sufficient to confer a pathogenic phenotype to the attenuated Beaudette strain.

Sarah Keep, Erica Bickerton, Maria Armesto, Paul Britton

Open access · hybridAbstract read
In one paragraph

Article in The Journal of general virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Sarah KeepThe Pirbright Institute, Surrey, UK.
Erica BickertonThe Pirbright Institute, Surrey, UK.
Maria ArmestoThe Pirbright Institute, Surrey, UK.
Paul BrittonThe Pirbright Institute, Surrey, UK.
The Pirbright Institute · GB

Funding

Biotechnology and Biological Sciences Research Council BB/H01425X/1Biotechnology and Biological Sciences Research Council BBS/E/I/00001256Biotechnology and Biological Sciences Research Council BBS/E/I/00007038
6 · The paper itself

Abstract

The replicase gene of the coronavirus infectious bronchitis virus (IBV) encodes 15 non-structural proteins (nsps). Nsp 3 is a multi-functional protein containing a conserved ADP-ribose-1″-phosphatase (ADRP) domain. The crystal structures of the domain from two strains of IBV, M41 (virulent) and Beaudette (avirulent), identified a key difference; M41 contains a conserved triple-glycine motif, whilst Beaudette contains a glycine-to-serine mutation that is predicted to abolish ADRP activity. Although ADRP activity has not been formally demonstrated for IBV nsp 3, Beaudette fails to bind ADP-ribose. The role of ADRP in virulence was investigated by generating rIBVs, based on Beaudette, containing either a restored triple-glycine motif or the complete M41 ADRP domain. Replication in vitro was unaffected by the ADRP modifications and the in vivo phenotype of the rIBVs was found to be apathogenic, indicating that restoration of the triple-glycine motif is not sufficient to restore virulence to the apathogenic Beaudette strain.

Indexed as

Adenosine Diphosphate RiboseAmino Acid MotifsAmino Acid SequenceAnimalsCell LineChickensGene Expression Regulation, ViralInfectious bronchitis virusMutationProtein BindingRNA-Dependent RNA PolymeraseViral ProteinsVirulenceAdenosine Diphosphate RiboseRNA-Dependent RNA PolymeraseViral ProteinsADRPcoronavirusinfectious bronchitis virusmacrodomainnsp3pathogenicity

Identifiers

PMID29893665
PMCPMC6171709
OpenAlexW2807917089

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.