Evidence map›Paper›PMID 29892956›Full record

ArticleGenes & genomics2018

The complete chloroplast genome of the green algae Hariotina reticulata (Scenedesmaceae, Sphaeropleales, Chlorophyta).

Lijuan He, Zhaokai Wang, Sulin Lou, Xiangzhi Lin, Fan Hu

Abstract read
PubMed Publisher
In one paragraph

Article in Genes & genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Characterization of the mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2023
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Lijuan HeXiamen Overseas Chinese Subtropical Plant Introduction Garden, Xiamen, Fujian, China.ORCID 0000-0001-9867-5708
Zhaokai WangEngineering Research Center of Marine Biological Resource Comprehensive Utilization, Third Institute of Oceanography, State Oceanic Administration, Xiamen, Fujian, China.
Sulin LouShenzhen Key Laboratory of Marine Bioresource and Eco-environmental Science, Guangdong Engineering Research Center for Marine Algal Biotechnology, College of Life Science and Oceanography, Shenzhen University, Shenzhen, Guangdong, China.
Xiangzhi LinEngineering Research Center of Marine Biological Resource Comprehensive Utilization, Third Institute of Oceanography, State Oceanic Administration, Xiamen, Fujian, China.
Fan HuEngineering Research Center of Marine Biological Resource Comprehensive Utilization, Third Institute of Oceanography, State Oceanic Administration, Xiamen, Fujian, China. fhu@tio.org.cn.
Fujian Institute of Oceanography · CNFujian Institute of Subtropical Botany · CNShenzhen University · CN

Funding

Demonstration of Marine Economy Innovative Development Project 12PYY001SF08Demonstration Project of Marine Economy Innovative Development Project 16PYY005SF09Natural Science Foundation of Fujian Province 2016J05100Xiamen Science and Technology Project 3502Z20172017Xiamen Southern Oceanographic Center 14CZP028HJ02
6 · The paper itself

Abstract

In this study, the chloroplast genome of Hariotina reticulata was fully sequenced and compared to other Sphaeropleales chloroplast genomes. It is 210,757 bp larger than most Sphaeropleales cpDNAs. It presents a traditional chloroplast structure, and contains 103 genes, including 68 protein-coding genes, six rRNA genes and 29 tRNA genes. The coding region constitutes of 43% of the whole cpDNA. Eighteen introns are found in 11 genes and six introns are unique for Hariotina. 11 open reading frames are identified among these introns. The synteny between Hariotina and Acutodesmus cpDNAs is in general identical, while within Sphaeropleales order, high variability in cpDNA architecture is indicated by general high DCJ distances. Ankyra judayi exhibits the greatest dissimilarity in gene synteny to the others and share some unique gene clusters with Treubaria triappendiculata. The phylogenomic analyses show that A. judayi is clustered with Treubariaceae species and sister to Chlorophyceae incertae sedis and other Sphaeropleales species. The monophyly of Sphaeropleales is rejected.

Indexed as

Base CompositionBase SequenceChlorophytaChloroplastsChromosome MappingDNA, ChloroplastGenomeGenome, ChloroplastOpen Reading FramesPhylogenyScenedesmusWhole Genome SequencingDNA, ChloroplastChloroplast genomeHariotinaPhylogenomic analysesSphaeroplealesSynteny

Identifiers

PMID29892956
OpenAlexW2787205529

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.