Evidence map›Paper›PMID 29892794›Full record

ArticleGenes & genomics2018

Characterization and comparative expression analysis of CUL1 genes in rice.

Sang-Hoon Kim, Og-Geum Woo, Hyunsoo Jang, Jae-Hoon Lee

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Article in Genes & genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Sang-Hoon KimDepartment of Biology Education, Pusan National University, Busan, 46241, Republic of Korea.
Og-Geum WooDepartment of Biology Education, Pusan National University, Busan, 46241, Republic of Korea.
Hyunsoo JangDepartment of Biology Education, Pusan National University, Busan, 46241, Republic of Korea.
Jae-Hoon LeeDepartment of Biology Education, Pusan National University, Busan, 46241, Republic of Korea. jhlee72@pusan.ac.kr.ORCID 0000-0003-1287-7267
Pusan National University · KR

Funding

Korea Institute of Planning and Evaluation for Technology in Food, Agriculture, Forestry and Fisheries 115081-2National Research Foundation of Korea NRF-2016R1D1A1B03930213the Strategic Initiative for Microbiomes in Agriculture and Food, Ministry of Agriculture, Food and Rural Affairs 916007021HD040
6 · The paper itself

Abstract

Cullin-RING E3 ubiquitin ligase (CRL) complex is known as the largest family of E3 ligases. The most widely characterized CRL, SCF complex (CRL1), utilizes CUL1 as a scaffold protein to assemble the complex components. To better understand CRL1-mediated cellular processes in rice, three CUL1 genes (OsCUL1s) were isolated in Oryza sativa. Although all OsCUL1 proteins exhibited high levels of amino acid similarities with each other, OsCUL1-3 had a somewhat distinct structure from OsCUL1-1 and OsCUL1-2. Basal expression levels of OsCUL1-3 were much lower than those of OsCUL1-1 and OsCUL1-2 in all selected samples, showing that OsCUL1-1 and OsCUL1-2 play predominant roles relative to OsCUL1-3 in rice. OsCUL1-1 and OsCUL1-2 genes were commonly upregulated in dry seeds and by ABA and salt/drought stresses, implying their involvement in ABA-mediated processes. These genes also showed similar expression patterns in response to various hormones and abiotic stresses, alluding to their functional redundancy. Expression of the OsCUL1-3 gene was also induced in dry seeds and by ABA-related salt and drought stresses, implying their participation in ABA responses. However, its expression pattern in response to hormones and abiotic stresses was somehow different from those of the OsCUL1-1 and OsCUL1-2 genes. Taken together, these findings suggest that the biological role and function of OsCUL1-3 may be distinct from those of OsCUL1-1 and OsCUL1-2. The results of expression analysis of OsCUL1 genes in this study will serve as a useful platform to better understand overlapping and distinct roles of OsCUL1 proteins and CRL1-mediated cellular processes in rice plants.

Indexed as

Amino Acid SequenceCullin ProteinsDroughtsGene Expression Regulation, PlantGenes, RegulatorGerminationHormonesOryzaPlant Growth RegulatorsPlant ProteinsSeedsSequence Homology, Amino AcidSodium ChlorideStress, PhysiologicalUbiquitinationUbiquitin-Protein LigasesCullin 1Cullin ProteinsHormonesPlant Growth RegulatorsPlant ProteinsSodium ChlorideUbiquitin-Protein LigasesAbiotic stressesCRLHormonesOsCUL1Ubiquitination

Identifiers

PMID29892794
OpenAlexW2766682279

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.