Evidence map›Paper›PMID 29892505›Full record

ArticlePeerJ2018

Restriction digest screening facilitates efficient detection of site-directed mutations introduced by CRISPR in

Ben A Evans, Olivia L Smith, Ethan S Pickerill, Mary K York, Kristen J P Buenconsejo, Antonio E Chambers, Douglas A Bernstein

Open access · goldAbstract read
In one paragraph

Article in PeerJ, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Stay-on-Task Exercises as a Tool To Maintain Focus during a CRISPR CURE.Journal of microbiology & biology education · 2021
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Ben A EvansDepartment of Biology, Ball State University, Muncie, IN, United States of America.
Olivia L SmithDepartment of Biology, Ball State University, Muncie, IN, United States of America.
Ethan S PickerillDepartment of Biology, Ball State University, Muncie, IN, United States of America.
Mary K YorkDepartment of Biology, Ball State University, Muncie, IN, United States of America.
Kristen J P BuenconsejoDepartment of Microbiology and Immunology, Drexel University, Philadelphia, PA, United States of America.
Antonio E ChambersDepartment of Biology, Ball State University, Muncie, IN, United States of America.
Douglas A BernsteinDepartment of Biology, Ball State University, Muncie, IN, United States of America.
Ball State University · USDrexel University · US

Funding

Distinguishing features of C. albicans pseudouridylation and their roles in pathogenesisR15AI130950 · NIAID · BALL STATE UNIVERSITY · PI BERNSTEIN, DOUGLAS A. · 2017 to 2025
$1.4M
NIAID NIH HHS R15 AI130950
6 · The paper itself

Abstract

Introduction of point mutations to a gene of interest is a powerful tool when determining protein function. CRISPR-mediated genome editing allows for more efficient transfer of a desired mutation into a wide range of model organisms. Traditionally, PCR amplification and DNA sequencing is used to determine if isolates contain the intended mutation. However, mutation efficiency is highly variable, potentially making sequencing costly and time consuming. To more efficiently screen for correct transformants, we have identified restriction enzymes sites that encode for two identical amino acids or one or two stop codons. We used CRISPR to introduce these restriction sites directly upstream of the

Indexed as

C. albicansCRISPRFilamentationRestriction digestionSite-directed mutagenesis

Identifiers

PMID29892505
PMCPMC5994162
OpenAlexW2806554968

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.