Evidence map›Paper›PMID 29892087›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2019

A gene-centric strategy for identifying disease-causing rare variants in dilated cardiomyopathy.

Claire Horvat, Renee Johnson, Lien Lam, Jacob Munro, Francesco Mazzarotto, Angharad M Roberts, Daniel S Herman, Michael Parfenov, Alireza Haghighi, Barbara McDonough and 12 more

Open access · bronzeAbstract read
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 31 citations in OpenAlex.

  1. Contribution of Noncanonical Splice Variants toCirculation. Genomic and precision medicine · 2021
    Trial
  2. Article
  3. Article
  4. Review
  5. Article
  6. Mechanisms of RBM20 Cardiomyopathy: Insights From Model Systems.Circulation. Genomic and precision medicine · 2024
    Review
  7. Role of non-coding variants in cardiovascular disease.Journal of cellular and molecular medicine · 2023
    Review
  8. Review
  9. Article
  10. Clinical Implication of Genetic Testing in Dilated Cardiomyopathy.International journal of heart failure · 2022
    Review
  11. Article
  12. Mechanisms ofJournal of cardiovascular development and disease · 2021
    Review
  13. Review
  14. Review
  15. Article
  16. Article
  17. Response to Brodehl et al.Genetics in medicine : official journal of the American College of Medical Genetics · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 7 institutions in 4 countries.

Claire HorvatMolecular Cardiology Division, Victor Chang Cardiac Research Institute, Sydney, New South Wales, Australia.
Renee JohnsonMolecular Cardiology Division, Victor Chang Cardiac Research Institute, Sydney, New South Wales, Australia.
Lien LamDepartment of Genetics, Harvard Medical School, Boston, Massachusetts, USA.
Jacob MunroMolecular, Structural and Computational Biology Division, Victor Chang Cardiac Research Institute, Sydney, New South Wales, Australia.
Francesco MazzarottoNIHR Cardiovascular Biomedical Research Unit, Royal Brompton & Harefield NHS Foundation Trust, and Imperial College London, London, UK.
Angharad M RobertsNIHR Cardiovascular Biomedical Research Unit, Royal Brompton & Harefield NHS Foundation Trust, and Imperial College London, London, UK.
Daniel S HermanDepartment of Genetics, Harvard Medical School, Boston, Massachusetts, USA.
Michael ParfenovDepartment of Genetics, Harvard Medical School, Boston, Massachusetts, USA.
Alireza HaghighiDepartment of Genetics, Harvard Medical School, Boston, Massachusetts, USA.
Barbara McDonoughDepartment of Genetics, Harvard Medical School, Boston, Massachusetts, USA.
Steven R DePalmaDepartment of Genetics, Harvard Medical School, Boston, Massachusetts, USA.
Anne M KeoghCardiac Physiology and Transplantation Division, Victor Chang Cardiac Research Institute, Sydney, New South Wales, Australia.
Peter S MacdonaldCardiac Physiology and Transplantation Division, Victor Chang Cardiac Research Institute, Sydney, New South Wales, Australia.
Christopher S HaywardCardiac Physiology and Transplantation Division, Victor Chang Cardiac Research Institute, Sydney, New South Wales, Australia.
Amy RobertsBoston Children's Hospital, Boston, Massachusetts, USA.
Paul J R BartonNIHR Cardiovascular Biomedical Research Unit, Royal Brompton & Harefield NHS Foundation Trust, and Imperial College London, London, UK.
Leanne E FelkinNIHR Cardiovascular Biomedical Research Unit, Royal Brompton & Harefield NHS Foundation Trust, and Imperial College London, London, UK.
Eleni GiannoulatouMolecular, Structural and Computational Biology Division, Victor Chang Cardiac Research Institute, Sydney, New South Wales, Australia.
Stuart A CookNIHR Cardiovascular Biomedical Research Unit, Royal Brompton & Harefield NHS Foundation Trust, and Imperial College London, London, UK.
J G SeidmanDepartment of Genetics, Harvard Medical School, Boston, Massachusetts, USA.
Christine E SeidmanDepartment of Genetics, Harvard Medical School, Boston, Massachusetts, USA.
Diane FatkinMolecular Cardiology Division, Victor Chang Cardiac Research Institute, Sydney, New South Wales, Australia. d.fatkin@victorchang.edu.au.
Victor Chang Cardiac Research Institute · AUHarvard University · USRoyal Brompton & Harefield NHS Foundation Trust · GBBoston Children's Hospital · USBrigham and Women's Hospital · USHoward Hughes Medical Institute · USNational University of Singapore · SG

Funding

Defining Pathways from Gene Mutation to Heart FailureR01HL080494 · NHLBI · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI CHEN, CHRISTOPHER S, SEIDMAN, CHRISTINE E · 2005 to 2024
$9.4M
Discovery of Novel Genetic Variants Underlying Unexplained Hypertrophic Cardiomyopathy by Whole Genome Sequencing, RNA-seq and iPSC modelingK08HL150284 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI HAGHIGHI, ALIREZA · 2020 to 2024
$832k
British Heart Foundation SP/10/10/28431Howard Hughes Medical InstituteNHLBI NIH HHS K08 HL150284NHLBI NIH HHS R01 HL080494
6 · The paper itself

Abstract

purposeWe evaluated strategies for identifying disease-causing variants in genetic testing for dilated cardiomyopathy (DCM).

methodsCardiomyopathy gene panel testing was performed in 532 DCM patients and 527 healthy control subjects. Rare variants in 41 genes were stratified using variant-level and gene-level characteristics.

resultsA majority of DCM cases and controls carried rare protein-altering cardiomyopathy gene variants. Variant-level characteristics alone had limited discriminative value. Differentiation between groups was substantially improved by addition of gene-level information that incorporated ranking of genes based on literature evidence for disease association. The odds of DCM were increased to nearly 9-fold for truncating variants or high-impact missense variants in the subset of 14 genes that had the strongest biological links to DCM (P <0.0001). For some of these genes, DCM-associated variants appeared to be clustered in key protein functional domains. Multiple rare variants were present in many family probands, however, there was generally only one "driver" pathogenic variant that cosegregated with disease.

conclusionRare variants in cardiomyopathy genes can be effectively stratified by combining variant-level and gene-level information. Prioritization of genes based on their a priori likelihood of disease causation is a key factor in identifying clinically actionable variants in cardiac genetic testing.

Indexed as

Genetic TestingHigh-Throughput Nucleotide SequencingCardiomyopathy, DilatedFemaleGenetic Predisposition to DiseaseHumansMaleMiddle AgedMutation, MissensePedigreeRare DiseasesDilated cardiomyopathyGenetic testingNext-generation sequencingpathogenic variant

Identifiers

PMID29892087
PMCPMC7336363
OpenAlexW2808710939

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.