Evidence map›Paper›PMID 29892085›Full record

ArticleScientific reports2018

Linkage disequilibrium in Brazilian Santa Inês breed, Ovis aries.

Amanda Botelho Alvarenga, Gregori Alberto Rovadoscki, Juliana Petrini, Luiz Lehmann Coutinho, Gota Morota, Matthew L Spangler, Luís Fernando Batista Pinto, Gleidson Giordano Pinto Carvalho, Gerson Barreto Mourão

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Amanda Botelho AlvarengaDepartment of Animal Science, University of São Paulo (USP)/Luiz de Queiroz College of Agriculture (ESALQ), Piracicaba, SP, Brazil.
Gregori Alberto RovadosckiDepartment of Animal Science, University of São Paulo (USP)/Luiz de Queiroz College of Agriculture (ESALQ), Piracicaba, SP, Brazil.
Juliana PetriniDepartment of Animal Science, University of São Paulo (USP)/Luiz de Queiroz College of Agriculture (ESALQ), Piracicaba, SP, Brazil.
Luiz Lehmann CoutinhoDepartment of Animal Science, University of São Paulo (USP)/Luiz de Queiroz College of Agriculture (ESALQ), Piracicaba, SP, Brazil.ORCID 0000-0002-7266-8881
Gota MorotaDepartment of Animal Science, University of Nebraska, Lincoln, NE, USA.ORCID 0000-0002-3567-6911
Matthew L SpanglerDepartment of Animal Science, University of Nebraska, Lincoln, NE, USA.
Luís Fernando Batista PintoDepartment of Animal Science, Federal University of Bahia (UFBA), Salvador, BA, Brazil.
Gleidson Giordano Pinto CarvalhoDepartment of Animal Science, Federal University of Bahia (UFBA), Salvador, BA, Brazil.
Gerson Barreto MourãoDepartment of Animal Science, University of São Paulo (USP)/Luiz de Queiroz College of Agriculture (ESALQ), Piracicaba, SP, Brazil. gbmourao@usp.br.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

For genomic selection to be successful, there must be sufficient linkage disequilibrium between the markers and the causal mutations. The objectives of this study were to evaluate the extent of LD in ovine using the Santa Inês breed and to infer the minimum number of markers required to reach reasonable prediction accuracy. In total, 38,168 SNPs and 395 samples were used. The mean LD between adjacent marker pairs measured by r

Indexed as

InbreedingLinkage DisequilibriumAnimalsBrazilChromosomesGenetic MarkersGenomeHaplotypesPolymorphism, Single NucleotideSelection, GeneticSheep, DomesticGenetic Markers

Identifiers

PMID29892085
PMCPMC5995818

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.