Evidence map›Paper›PMID 29892030›Full record

ArticleScientific reports2018

Conformational rearrangements of the C1 ring in KaiC measure the timing of assembly with KaiB.

Atsushi Mukaiyama, Yoshihiko Furuike, Jun Abe, Shin-Ichi Koda, Eiki Yamashita, Takao Kondo, Shuji Akiyama

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. The cyanobacterial circadian clock.Npj biological timing and sleep · 2025
    Review
  4. Frontiers in cell and developmental biology · 2025
    Review
  5. Article
  6. Article
  7. Article
  8. Regulation mechanisms of the dual ATPase in KaiC.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 1 country.

Atsushi MukaiyamaResearch Center of Integrative Molecular Systems (CIMoS), Institute for Molecular Science, National Institute for Natural Sciences, 38 Nishigo-Naka, Myodaiji, Okazaki, 444-8585, Japan. amukai@ims.ac.jp.
Yoshihiko FuruikeResearch Center of Integrative Molecular Systems (CIMoS), Institute for Molecular Science, National Institute for Natural Sciences, 38 Nishigo-Naka, Myodaiji, Okazaki, 444-8585, Japan.
Jun AbeResearch Center of Integrative Molecular Systems (CIMoS), Institute for Molecular Science, National Institute for Natural Sciences, 38 Nishigo-Naka, Myodaiji, Okazaki, 444-8585, Japan.
Shin-Ichi KodaResearch Center of Integrative Molecular Systems (CIMoS), Institute for Molecular Science, National Institute for Natural Sciences, 38 Nishigo-Naka, Myodaiji, Okazaki, 444-8585, Japan.
Eiki YamashitaInstitute for Protein Research, Osaka University, 3-2 Yamada-oka, Suita, 565-0871, Japan.
Takao KondoDivision of Biological Science, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, 464-8602, Japan.
Shuji AkiyamaResearch Center of Integrative Molecular Systems (CIMoS), Institute for Molecular Science, National Institute for Natural Sciences, 38 Nishigo-Naka, Myodaiji, Okazaki, 444-8585, Japan. akiyamas@ims.ac.jp.
Institute for Molecular Science · JPThe Graduate University for Advanced Studies, SOKENDAI · JPNagoya University · JPNational Institutes of Natural Sciences · JPOsaka University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

KaiC, the core oscillator of the cyanobacterial circadian clock, is composed of an N-terminal C1 domain and a C-terminal C2 domain, and assembles into a double-ring hexamer upon ATP binding. Cyclic phosphorylation and dephosphorylation at Ser431 and Thr432 in the C2 domain proceed with a period of approximately 24 h in the presence of other clock proteins, KaiA and KaiB, but recent studies have revealed a crucial role for the C1 ring in determining the cycle period. In this study, we mapped dynamic structural changes of the C1 ring in solution using a combination of site-directed tryptophan mutagenesis and fluorescence spectroscopy. We found that the C1 ring undergoes a structural transition, coupled with ATPase activity and the phosphorylation state, while maintaining its hexameric ring structure. This transition triggered by ATP hydrolysis in the C1 ring in specific phosphorylation states is a necessary event for recruitment of KaiB, limiting the overall rate of slow complex formation. Our results provide structural and kinetic insights into the C1-ring rearrangements governing the slow dynamics of the cyanobacterial circadian clock.

Indexed as

Mitochondrial DynamicsProtein MultimerizationAdenosine TriphosphatasesBacterial ProteinsCircadian Rhythm Signaling Peptides and ProteinsCyanobacteriaDNA Mutational AnalysisMutagenesis, Site-DirectedPhosphorylationProtein ConformationProtein Processing, Post-TranslationalSpectrometry, FluorescenceAdenosine TriphosphatasesBacterial ProteinsCircadian Rhythm Signaling Peptides and ProteinsKaiB protein, cyanobacteriaKaiC protein, cyanobacteria

Identifiers

PMID29892030
PMCPMC5995851
OpenAlexW2807053293

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.