Evidence map›Paper›PMID 29891837›Full record

ArticleNature communications2018

Parallels between experimental and natural evolution of legume symbionts.

Camille Clerissi, Marie Touchon, Delphine Capela, Mingxing Tang, Stéphane Cruveiller, Clémence Genthon, Céline Lopez-Roques, Matthew A Parker, Lionel Moulin, Catherine Masson-Boivin and 1 more

Erratum issuedAbstract readComparative Study
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Microorganisms · 2024
    Article
  7. Testing Phylogenetic Stability with Variable Taxon Sampling.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Camille ClerissiMicrobial Evolutionary Genomics, Institut Pasteur, 28 rue Dr. Roux, 75015, Paris, France.
Marie TouchonMicrobial Evolutionary Genomics, Institut Pasteur, 28 rue Dr. Roux, 75015, Paris, France.
Delphine CapelaLIPM, Université de Toulouse, INRA, CNRS, 31326 Castanet-Tolosan, France.ORCID http://orcid.org/0000-0003-3891-672X
Mingxing TangLIPM, Université de Toulouse, INRA, CNRS, 31326 Castanet-Tolosan, France.
Stéphane CruveillerLABGeM, Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Université d'Evry, Université Paris-Saclay, 2 rue Gaston Crémieux, 91057, Evry, France.
Clémence GenthonINRA, US 1426, GeT-PlaGe, Genotoul, 31326, Castanet-Tolosan, France.
Céline Lopez-RoquesINRA, US 1426, GeT-PlaGe, Genotoul, 31326, Castanet-Tolosan, France.
Matthew A ParkerDepartment of Biological Sciences, State University of New York, 4400 Vestal Parkway East, PO Box 6000, Binghamton, NY, 13902, USA.
Lionel MoulinIRD, Cirad, Université de Montpellier, IPME, 911, avenue Agropolis-BP64501, 34394, Montpellier Cedex 5, France.
Catherine Masson-BoivinLIPM, Université de Toulouse, INRA, CNRS, 31326 Castanet-Tolosan, France. Catherine.masson@inra.fr.
Eduardo P C RochaMicrobial Evolutionary Genomics, Institut Pasteur, 28 rue Dr. Roux, 75015, Paris, France. erocha@pasteur.fr.ORCID http://orcid.org/0000-0001-7704-822X

Funding

Agence Nationale de la Recherche (French National Research Agency) ANR-10-INBS-09Agence Nationale de la Recherche (French National Research Agency) ANR-10-LABX-41Agence Nationale de la Recherche (French National Research Agency) ANR-12-ADAP-0014-01Agence Nationale de la Recherche (French National Research Agency) ANR-16-CE20-0011-01
6 · The paper itself

Abstract

The emergence of symbiotic interactions has been studied using population genomics in nature and experimental evolution in the laboratory, but the parallels between these processes remain unknown. Here we compare the emergence of rhizobia after the horizontal transfer of a symbiotic plasmid in natural populations of Cupriavidus taiwanensis, over 10 MY ago, with the experimental evolution of symbiotic Ralstonia solanacearum for a few hundred generations. In spite of major differences in terms of time span, environment, genetic background, and phenotypic achievement, both processes resulted in rapid genetic diversification dominated by purifying selection. We observe no adaptation in the plasmid carrying the genes responsible for the ecological transition. Instead, adaptation was associated with positive selection in a set of genes that led to the co-option of the same quorum-sensing system in both processes. Our results provide evidence for similarities in experimental and natural evolutionary transitions and highlight the potential of comparisons between both processes to understand symbiogenesis.

Indexed as

Directed Molecular EvolutionEvolution, MolecularAdaptation, PhysiologicalCupriavidusFabaceaeGene Regulatory NetworksGenes, BacterialGenetic VariationGene Transfer, HorizontalMimosaMutationPlasmidsRalstonia solanacearumSymbiosis

Identifiers

PMID29891837
PMCPMC5995829

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.