Evidence map›Paper›PMID 29891760›Full record

ArticleViruses2018

Small RNA NGS Revealed the Presence of Cherry Virus A and Little Cherry Virus 1 on Apricots in Hungary.

Dániel Baráth, Nikoletta Jaksa-Czotter, János Molnár, Tünde Varga, Júlia Balássy, Luca Krisztina Szabó, Zoltán Kirilla, Gábor E Tusnády, Éva Preininger, Éva Várallyay

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 20 citations in OpenAlex.

  1. Pooled it
  2. Recent advances in characterization and diagnosis of stone fruit tree viruses.Physiology and molecular biology of plants : an international journal of functional plant biology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Dániel BaráthAgricultural Biotechnology Institute, NARIC, 2100 Gödöllő, Hungary. barath.daniel@abc.naik.hu.
Nikoletta Jaksa-CzotterAgricultural Biotechnology Institute, NARIC, 2100 Gödöllő, Hungary. czotter.nikoletta@abc.naik.hu.
János MolnárDepartment of Biotechnology, Nanophagetherapy Center, Enviroinvest Corporation, 7632 Pécs, Hungary. molnarjanesz@gmail.com.
Tünde VargaAgricultural Biotechnology Institute, NARIC, 2100 Gödöllő, Hungary. varga.tunde07@gmail.com.
Júlia BalássyAgricultural Biotechnology Institute, NARIC, 2100 Gödöllő, Hungary. sargarigofutty@gmail.com.
Luca Krisztina SzabóFruitculture Research Institute, NARIC, 1223 Budapest, Hungary. szabo.luca.krisztina@fruitresearch.naik.hu.
Zoltán KirillaFruitculture Research Institute, NARIC, 1223 Budapest, Hungary. zoltan.kirilla@gmail.com.
Gábor E TusnádyInstitute of Enzymology, Research Center of Natural Sciences, HAS, 1117 Budapest, Hungary. tusnady.gabor@ttk.mta.hu.
Éva PreiningerFruitculture Research Institute, NARIC, 1223 Budapest, Hungary. e.preininger@resinfru.hu.
Éva VárallyayAgricultural Biotechnology Institute, NARIC, 2100 Gödöllő, Hungary. varallyay.eva@abc.naik.hu.
Agricultural Biotechnology Institute · HUNational Agricultural Research and Innovation Centre · HUEnviroinvest Environmental and Biotechnological Corp · HUInstitute of Molecular Life Sciences · HU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fruit trees, such as apricot trees, are constantly exposed to the attack of viruses. As they are propagated in a vegetative way, this risk is present not only in the field, where they remain for decades, but also during their propagation. Metagenomic diagnostic methods, based on next generation sequencing (NGS), offer unique possibilities to reveal all the present pathogens in the investigated sample. Using NGS of small RNAs, a special field of these techniques, we tested leaf samples of different varieties of apricot originating from an isolator house or open field stock nursery. As a result, we identified Cherry virus A (CVA) and little cherry virus 1 (LChV-1) for the first time in Hungary. The NGS results were validated by RT-PCR and also by Northern blot in the case of CVA. Cloned and Sanger sequenced viral-specific PCR products enabled us to investigate their phylogenetic relationships. However, since these pathogens have not been described in our country before, their role in symptom development and modification during co-infection with other viruses requires further investigation.

Indexed as

Blotting, NorthernClosteroviridaeCluster AnalysisFlexiviridaeHigh-Throughput Nucleotide SequencingHungaryMetagenomicsPhylogenyPlant LeavesPrunus armeniacaReverse Transcriptase Polymerase Chain ReactionRNA, ViralSequence HomologyRNA, ViralapricotCherry virus Adiagnosticsfruit tree viruseslittle cherry virus 1metagenomicssmall RNA NGS

Identifiers

PMID29891760
PMCPMC6024520
OpenAlexW2806356636

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.