Evidence map›Paper›PMID 29889099›Full record

ArticleThe Journal of clinical investigation2018

Dominant-negative IKZF1 mutations cause a T, B, and myeloid cell combined immunodeficiency.

David Boutboul, Hye Sun Kuehn, Zoé Van de Wyngaert, Julie E Niemela, Isabelle Callebaut, Jennifer Stoddard, Christelle Lenoir, Vincent Barlogis, Catherine Farnarier, Frédéric Vely and 24 more

Open access · bronzeAbstract readCase Reports
In one paragraph

Article in The Journal of clinical investigation, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed, 2 pooled it
18.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed, 2 syntheses or guidelines pooled it, 164 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Review
  5. Article
  6. Article
  7. Article
  8. Cas9eLife · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Inborn errors of regulatory T-cell differentiation and function.The Journal of allergy and clinical immunology · 2025
    Review
  13. Article
  14. Review
  15. Article
  16. IKZF-associated inborn errors of immunity.Journal of human immunity · 2025
    Review
  17. Review
  18. Article
  19. Article
  20. Review

39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors at 17 institutions in 4 countries.

David BoutboulLaboratory of Lymphocyte Activation and Susceptibility to EBV Infection, Inserm UMR 1163, Paris, France.
Hye Sun KuehnImmunology Service, Department of Laboratory Medicine, Clinical Center, NIH, Bethesda, Maryland, USA.
Zoé Van de WyngaertLaboratory of Lymphocyte Activation and Susceptibility to EBV Infection, Inserm UMR 1163, Paris, France.
Julie E NiemelaImmunology Service, Department of Laboratory Medicine, Clinical Center, NIH, Bethesda, Maryland, USA.
Isabelle CallebautCentre National de la Recherche Scientifique UMR 7590, Sorbonne Universities, University Pierre et Marie Curie-Paris 6-MNHN-IRD-IUC, Paris, France.
Jennifer StoddardImmunology Service, Department of Laboratory Medicine, Clinical Center, NIH, Bethesda, Maryland, USA.
Christelle LenoirLaboratory of Lymphocyte Activation and Susceptibility to EBV Infection, Inserm UMR 1163, Paris, France.
Vincent BarlogisDepartment of Paediatric Haematology-Oncology, La Timone Hospital, Marseille, France.
Catherine FarnarierAssistance Publique - Hôpitaux de Marseille (APHM) Hôpital Timone Enfants, Service d'Immunologie - Marseille Immunopôle, Marseille, France.
Frédéric VelyAix Marseille University, APHM, CNRS, Inserm, Centre d'Immunologie de Marseille-Luminy (CIML), Hôpital Timone Enfants, Service d'Immunologie - Marseille Immunopôle, Marseille, France.
Nao YoshidaDepartment of Hematology and Oncology, Children's Medical Center, Japanese Red Cross Nagoya First Hospital, Nagoya, Japan.
Seiji KojimaDepartment of Pediatrics, Nagoya University Graduate School of Medicine, Nagoya, Japan.
Hirokazu KaneganeDepartment of Pediatrics and Developmental Biology, Graduate School of Medical and Dental Sciences, Tokyo Medical and Dental University, Tokyo, Japan.
Akihiro HoshinoDepartment of Pediatrics and Developmental Biology, Graduate School of Medical and Dental Sciences, Tokyo Medical and Dental University, Tokyo, Japan.
Fabian HauckDepartment of Pediatric Immunology and Rheumatology, Dr. von Hauner Children's Hospital, Ludwig-Maximilians-Universität (LMU), Munich, Germany.
Ludovic LhermitteUniversity Paris Descartes Sorbonne Cité, Institut Necker-Enfants Malades (INEM), Inserm 1151 and Laboratory of Onco-Hematology, Assistance Publique-Hôpitaux de Paris (APHP), Necker-Enfants Malades Hospital, Paris, France.
Vahid AsnafiUniversity Paris Descartes Sorbonne Cité, Institut Necker-Enfants Malades (INEM), Inserm 1151 and Laboratory of Onco-Hematology, Assistance Publique-Hôpitaux de Paris (APHP), Necker-Enfants Malades Hospital, Paris, France.
Philip RoehrsLevine Children's Hospital, Carolinas Healthcare System, Charlotte, North Carolina, USA.
Shaoying ChenDepartment of Pediatrics, Division of Rheumatology, Medical College of Wisconsin, Madison, Wisconsin, USA.
James W VerbskyDepartment of Pediatrics, Division of Rheumatology, Medical College of Wisconsin, Madison, Wisconsin, USA.
Katherine R CalvoHematology section, Department of Laboratory Medicine, Clinical Center, NIH, Bethesda, Maryland, USA.
Ammar HusamiDivision of Human Genetics and Division of Immune Deficiency and Bone Marrow Transplant, Cincinnati Children's Hospital, Cincinnati, Ohio, USA.
Kejian ZhangDivision of Human Genetics and Division of Immune Deficiency and Bone Marrow Transplant, Cincinnati Children's Hospital, Cincinnati, Ohio, USA.
Joseph RobertsDepartment of Pediatrics, Duke University Medical Center, Durham, North Carolina, USA.
David AmrolUniversity of South Carolina School of Medicine, Columbia, South Carolina, USA.
John SleasemanDepartment of Pediatrics, Duke University Medical Center, Durham, North Carolina, USA.
Amy P HsuLaboratory of Clinical Infectious Diseases, NIAID, NIH, Bethesda, Maryland, USA.
Steven M HollandLaboratory of Clinical Infectious Diseases, NIAID, NIH, Bethesda, Maryland, USA.
Rebecca MarshDivision of Human Genetics and Division of Immune Deficiency and Bone Marrow Transplant, Cincinnati Children's Hospital, Cincinnati, Ohio, USA.
Alain FischerUniversity Paris Descartes Sorbonne Paris Cité, Imagine Institute, Paris, France.
Thomas A FleisherImmunology Service, Department of Laboratory Medicine, Clinical Center, NIH, Bethesda, Maryland, USA.
Capucine PicardLaboratory of Lymphocyte Activation and Susceptibility to EBV Infection, Inserm UMR 1163, Paris, France.
Sylvain LatourLaboratory of Lymphocyte Activation and Susceptibility to EBV Infection, Inserm UMR 1163, Paris, France.
Sergio D RosenzweigImmunology Service, Department of Laboratory Medicine, Clinical Center, NIH, Bethesda, Maryland, USA.
Inserm · FRNational Institutes of Health Clinical Center · USCincinnati Children's Hospital Medical Center · USHôpital Necker-Enfants Malades · FRDuke Medical Center · USNational Institute of Allergy and Infectious Diseases · USTokyo Medical and Dental University · JPUniversity of Wisconsin–Madison · USAssistance Publique Hôpitaux de Marseille · FRCarolinas Healthcare System · USCentre National de la Recherche Scientifique · FRHôpital de la Timone · FRLudwig-Maximilians-Universität München · DEMaryland Oncology Hematology · USNagoya University · JPSorbonne Université · FRUniversity of South Carolina · US

Funding

Studies of Inherited Causes of Fungal SusceptabilityZIAAI001122 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI ROSENZWEIG, SERGIO · 2010 to 2025
$26.0M
Genes And Gene Products As ImmunoadjuvantsZIAAI000647 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI HOLLAND, STEVEN · 2009 to 2025
$22.6M
Transgenic Animal Models Of Human Immune DefectsZIAAI000646 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI HOLLAND, STEVEN · 2009 to 2025
$22.2M
Mutation Analysis Of Selected Lymphoid Immune DisordersZIACL010304 · CLC · CLINICAL CENTER · PI ROSENZWEIG, SERGIO · 2009 to 2025
$0k
The Role of microRNA in Hematologic MalignanciesZIACL090025 · CLC · CLINICAL CENTER · PI CALVO, KATHERINE · 2010 to 2025
$0k
6 · The paper itself

Abstract

Ikaros/IKZF1 is an essential transcription factor expressed throughout hematopoiesis. IKZF1 is implicated in lymphocyte and myeloid differentiation and negative regulation of cell proliferation. In humans, somatic mutations in IKZF1 have been linked to the development of B cell acute lymphoblastic leukemia (ALL) in children and adults. Recently, heterozygous germline IKZF1 mutations have been identified in patients with a B cell immune deficiency mimicking common variable immunodeficiency. These mutations demonstrated incomplete penetrance and led to haploinsufficiency. Herein, we report 7 unrelated patients with a novel early-onset combined immunodeficiency associated with de novo germline IKZF1 heterozygous mutations affecting amino acid N159 located in the DNA-binding domain of IKZF1. Different bacterial and viral infections were diagnosed, but Pneumocystis jirovecii pneumonia was reported in all patients. One patient developed a T cell ALL. This immunodeficiency was characterized by innate and adaptive immune defects, including low numbers of B cells, neutrophils, eosinophils, and myeloid dendritic cells, as well as T cell and monocyte dysfunctions. Notably, most T cells exhibited a naive phenotype and were unable to evolve into effector memory cells. Functional studies indicated these mutations act as dominant negative. This defect expands the clinical spectrum of human IKZF1-associated diseases from somatic to germline, from haploinsufficient to dominant negative.

Indexed as

Germ-Line MutationLoss of Function MutationAdolescentAdultAmino Acid SequenceAmino Acid SubstitutionB-LymphocytesChildChild, PreschoolFemaleGenes, DominantHeterozygoteHumansIkaros Transcription FactorImmunologic Deficiency SyndromesInfantIkaros Transcription FactorIKZF1 protein, humanGeneticsImmunologyMonocytesMonogenic diseasesT cells

Identifiers

PMID29889099
PMCPMC6026000
OpenAlexW2805128721

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.