Evidence map›Paper›PMID 29888964›Full record

ArticleEpigenomics2018

Promoter methylation of PGC1A and PGC1B predicts cancer incidence in a veteran cohort.

Jacob K Kresovich, Brian T Joyce, Tao Gao, Yinan Zheng, Zhou Zhang, Christopher J Achenbach, Robert L Murphy, Allan C Just, Jincheng Shen, Hushan Yang and 4 more

Open access · greenAbstract read
In one paragraph

Article in Epigenomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 16 citations in OpenAlex.

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  11. Extracellular Spermine Activates DNA Methyltransferase 3A and 3B.International journal of molecular sciences · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 9 institutions in 1 country.

Jacob K KresovichCenter for Population Epigenetics, Robert H Lurie Comprehensive Cancer Center & Department of Preventive Medicine, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.
Brian T JoyceCenter for Population Epigenetics, Robert H Lurie Comprehensive Cancer Center & Department of Preventive Medicine, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.
Tao GaoCenter for Population Epigenetics, Robert H Lurie Comprehensive Cancer Center & Department of Preventive Medicine, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.
Yinan ZhengCenter for Population Epigenetics, Robert H Lurie Comprehensive Cancer Center & Department of Preventive Medicine, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.
Zhou ZhangCenter for Population Epigenetics, Robert H Lurie Comprehensive Cancer Center & Department of Preventive Medicine, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.
Christopher J AchenbachRobert H Lurie Comprehensive Cancer Center, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.
Robert L MurphyRobert H Lurie Comprehensive Cancer Center, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.
Allan C JustDepartment of Preventive Medicine, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Jincheng ShenDepartment of Population Health Sciences, University of Utah School of Medicine, Salt Lake City, UT 84108, USA.
Hushan YangDivision of Population Science, Department of Medical Oncology, Sidney Kimmel Cancer Center, Thomas Jefferson University, Philadelphia, PA 19107, USA.
Pantel VokonasVA Normative Aging Study, Veterans Affairs Boston Healthcare System & the Department of Medicine, Boston University School of Medicine, Boston, MA 02118, USA.
Joel SchwartzDepartment of Environmental Health, Harvard TH Chan School of Public Health, Harvard University, Boston, MA 02115, USA.
Andrea A BaccarelliDepartments of Epidemiology & Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY 10032, USA.
Lifang HouCenter for Population Epigenetics, Robert H Lurie Comprehensive Cancer Center & Department of Preventive Medicine, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.
Northwestern University · USCenter for Global Health · USRobert H. Lurie Comprehensive Cancer Center of Northwestern UniversityBoston University · USColumbia University · USHarvard University · USIcahn School of Medicine at Mount Sinai · USSidney Kimmel Cancer Center · USUtah Department of Health · US

Funding

Translational Research Support CoreP30ES000002 · NIEHS · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI JAIME ELIZABETH HART · 1985 to 2026
$44.6M
UIC CANCER PREVENTION &CONTROL RESEARCH TRAINING GRANTR25CA057699 · NCI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI FITZGIBBON, MARIAN L. · 1992 to 2017
$8.2M
Epigenetic Effects of Particles and Metals on Cardiac Health of an Aging CohortR01ES015172 · NIEHS · HARVARD SCHOOL OF PUBLIC HEALTH · PI SCHWARTZ, JOEL D · 2006 to 2015
$4.8M
Pathology and Genomics CoreU54CA221205 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI HOU, LIFANG, MURPHY, ROBERT LEO · 2017 to 2021
$4.2M
Molecular and Epigenetic Mitochondriomics of Air Particles, Lead and CognitionR01ES021733 · NIEHS · HARVARD SCHOOL OF PUBLIC HEALTH · PI BACCARELLI, ANDREA · 2012 to 2015
$2.4M
Prenatal Exposure to Endocrine Disrupters, DNA Methylation, and Childhood ObesityR00ES023450 · NIEHS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI JUST, ALLAN C. · 2016 to 2018
$747k
NCI NIH HHS R25 CA057699NCI NIH HHS U54 CA221205NIEHS NIH HHS P30 ES000002NIEHS NIH HHS R00 ES023450NIEHS NIH HHS R01 ES015172NIEHS NIH HHS R01 ES021733
6 · The paper itself

Abstract

aimPrevious studies suggest telomere shortening represses PGC1A and PGC1B expression leading to mitochondrial dysfunction. Methylation of CpG sites within these genes may interact with these factors to affect cancer risk. MATERIALS &

methodsAmong 385 men, we identified 84 incidents of cancers (predominantly prostate and nonmelanoma skin). We examined associations between leukocyte DNA methylation of 41 CpGs from PGC1A and PGC1B with telomere length, mitochondrial 8-OHdG lesions, mitochondrial abundance and cancer incidence.

resultsMethylation of five and eight CpG sites were significantly associated with telomere length and mitochondrial abundance at p < 0.05. Two CpG sites were independently associated with cancer risk: cg27514608 (PGC1A, TSS1500; HR: 1.55, 95% CI: 1.19-2.03, FDR = 0.02), and cg15219393 (PGC1B, first exon/5'UTR; HR: 3.71, 95% CI: 1.82-7.58, FDR < 0.01). Associations with cg15219393 were observed primarily among men with shorter leukocyte telomeres.

conclusionPGC1A and PGC1B methylation may serve as early biomarkers of cancer risk.

Indexed as

DNA MethylationPromoter Regions, GeneticAgedCarrier ProteinsCpG IslandsHumansLeukocytesMaleNeoplasmsPeroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alphaRNA-Binding ProteinsVeteransCarrier ProteinsPeroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alphaPPARGC1A protein, humanPPARGC1B protein, humanRNA-Binding Proteinscancer biomarkerscancer epigeneticsDNA methylation

Identifiers

PMID29888964
PMCPMC6367713
OpenAlexW2807893550

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.