Evidence map›Paper›PMID 29888750›Full record

ArticleiScience2018

Functional Modulation of Gene Expression by Ultraconserved Long Non-coding RNA TUC338 during Growth of Human Hepatocellular Carcinoma.

Hui-Ju Wen, Michael P Walsh, Irene K Yan, Kenji Takahashi, Alan Fields, Tushar Patel

Open access · goldAbstract read
In one paragraph

Article in iScience, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
0.5field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 15 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Hui-Ju WenDepartment of Transplantation, Mayo Clinic, 4500 San Pablo Road, Jacksonville, FL 32224, USA; Department of Cancer Biology, Mayo Clinic, Jacksonville, FL 32224, USA.
Michael P WalshDepartment of Cancer Biology, Mayo Clinic, Jacksonville, FL 32224, USA.
Irene K YanDepartment of Transplantation, Mayo Clinic, 4500 San Pablo Road, Jacksonville, FL 32224, USA; Department of Cancer Biology, Mayo Clinic, Jacksonville, FL 32224, USA.
Kenji TakahashiDepartment of Transplantation, Mayo Clinic, 4500 San Pablo Road, Jacksonville, FL 32224, USA; Department of Cancer Biology, Mayo Clinic, Jacksonville, FL 32224, USA.
Alan FieldsDepartment of Cancer Biology, Mayo Clinic, Jacksonville, FL 32224, USA.
Tushar PatelDepartment of Transplantation, Mayo Clinic, 4500 San Pablo Road, Jacksonville, FL 32224, USA; Department of Cancer Biology, Mayo Clinic, Jacksonville, FL 32224, USA. Electronic address: patel.tushar@mayo.edu.
Jacksonville College · USMayo Clinic in Florida · US

Funding

Mechanisms of Survival Signaling in Biliary EpitheliaR01DK069370 · NIDDK · SCOTT AND WHITE MEMORIAL HOSPITAL · PI PATEL, TUSHAR · 2005 to 2014
$2.4M
NIDDK NIH HHS R01 DK069370
6 · The paper itself

Abstract

TUC338 is an ultraconserved long non-coding RNA that contributes to transformed cell growth in hepatocellular carcinoma (HCC). Genomic regions of TUC338 occupancy were enriched in unique or known binding motifs homologous to the tumor suppressors Pax6 and p53. Genes involved in cell proliferation were enriched within a 9-kb range of TUC338-binding sites. TUC338 RNA-based purification was used to isolate chromatin for mass spectrometry, and the plasminogen activator inhibitor-1 RNA-binding protein (PAI-RBP1) was identified as a TUC338 RNA-binding partner. The PAI-RBP1 target gene plasminogen activator inhibitor-1 (PAI-1) itself could also be post-transcriptionally regulated by TUC338. Thus modulation of transformed cell growth by TUC338 may involve binding to PAI-RBP1 as well as to sequence-defined

Identifiers

PMID29888750
PMCPMC5993207
OpenAlexW2794092614

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.